BiasViz: visualization of amino acid biased regions in protein alignments. - Matthew R. Huska; Henrik Buschmann; Miguel A. Andrade-Navarro (Bioinform., 2007)

MedlineRanker: flexible ranking of biomedical literature. - Jean-Fred Fontaine; Adriano Barbosa-Silva; Martin H. Schaefer 001; Matthew R. Huska; Enrique M. Muro; Miguel A. Andrade-Navarro (Nucleic Acids Res., 2009)

Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin. - Gareth A. Palidwor; Sergey Shcherbinin; Matthew R. Huska; Tamas Rasko; Ulrich Stelzl; Anup Arumughan; Raphaele Foulle; Pablo Porras; Luis Sánchez-Pulido; Erich E. Wanker; Miguel A. Andrade-Navarro (PLoS Comput. Biol., 2009)

Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns. - Matthew R. Huska; Martin Vingron (PLoS Comput. Biol., 2016)

Genomic basis for RNA alterations in cancer. - Claudia Calabrese; Natalie R. Davidson; Deniz Demircioglu; Nuno A. Fonseca; Yao He; André Kahles; Kjong-Van Lehmann; Fenglin Liu; Yuichi Shiraishi; Cameron M. Soulette; Lara Urban; Liliana Greger; et al. (Nat., 2020)

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. - Thomas B. K. Watkins; Emma C. Colliver; Matthew R. Huska; Tom L. Kaufmann; Emilia L. Lim; Cody B. Duncan; Kerstin Haase; Peter Van Loo; Charles Swanton; Nicholas McGranahan; Roland F. Schwarz (PLoS Comput. Biol., 2023)