PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. - Jennifer L. Gardy; Matthew R. Laird; Fei Chen 002; Sébastien Rey; C. J. Walsh; Martin Ester; Fiona S. L. Brinkman (Bioinform., 2005)

PSORTdb: a protein subcellular localization database for bacteria. - Sébastien Rey; Michael Acab; Jennifer L. Gardy; Matthew R. Laird; Katalin de Fays; Christophe G. Lambert; Fiona S. L. Brinkman (Nucleic Acids Res., 2005)

Improving the specificity of high-throughput ortholog prediction. - Debra L. Fulton; Yvonne Y. Li; Matthew R. Laird; Benjamin G. S. Horsman; Fiona M. Roche; Fiona S. L. Brinkman (BMC Bioinform., 2006)

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. - Nancy Y. Yu; James R. Wagner; Matthew R. Laird; Gabor Melli; Sébastien Rey; Raymond Lo; Phuong Dao; Süleyman Cenk Sahinalp; Martin Ester; Leonard J. Foster; Fiona S. L. Brinkman (Bioinform., 2010)

Curating the innate immunity interactome. - David J. Lynn; Calvin Chan; Misbah Naseer; Melissa Yau; Raymond Lo; Anastasia Sribnaia; Giselle Ring; Jaimmie Que; Kathleen Wee; Geoffrey L. Winsor; Matthew R. Laird; Karin Breuer; et al. (BMC Syst. Biol., 2010)

PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea. - Nancy Y. Yu; Matthew R. Laird; Cory Spencer; Fiona S. L. Brinkman (Nucleic Acids Res., 2011)

MicrobeDB: a locally maintainable database of microbial genomic sequences. - Morgan G. I. Langille; Matthew R. Laird; William W. L. Hsiao; Terry A. Chiu; Jonathan A. Eisen; Fiona S. L. Brinkman (Bioinform., 2012)

InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. - Karin Breuer; Amir K. Foroushani; Matthew R. Laird; Carol Chen; Anastasia Sribnaia; Raymond Lo; Geoffrey L. Winsor; Robert E. W. Hancock; Fiona S. L. Brinkman; David J. Lynn (Nucleic Acids Res., 2013)

IslandViewer update: improved genomic island discovery and visualization. - Bhavjinder K. Dhillon; Terry A. Chiu; Matthew R. Laird; Morgan G. I. Langille; Fiona S. L. Brinkman (Nucleic Acids Res., 2013)

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. - Matthew D. Whiteside; Geoffrey L. Winsor; Matthew R. Laird; Fiona S. L. Brinkman (Nucleic Acids Res., 2013)

GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications. - Matthew R. Laird; Morgan G. I. Langille; Fiona S. L. Brinkman (Bioinform., 2015)

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis. - Bhavjinder K. Dhillon; Matthew R. Laird; Julie A. Shay; Geoffrey L. Winsor; Raymond Lo; Fazmin Nizam; Sheldon K. Pereira; Nicholas Waglechner; Andrew G. McArthur; Morgan G. I. Langille; Fiona S. L. Brinkman (Nucleic Acids Res., 2015)

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures. - Michael A. Peabody; Matthew R. Laird; Caitlyn Vlasschaert; Raymond Lo; Fiona S. L. Brinkman (Nucleic Acids Res., 2016)

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. - Magali Ruffier; Andreas Kähäri; Monika Komorowska; Stephen Keenan; Matthew R. Laird; Ian Longden; Glenn Proctor; Steve Searle; Daniel M. Staines; Kieron R. Taylor; Alessandro Vullo; Andrew D. Yates; et al. (Database J. Biol. Databases Curation, 2017)

Ensembl 2017. - Bronwen L. Aken; Premanand Achuthan; Wasiu A. Akanni; M. Ridwan Amode; Friederike Bernsdorff; Jyothish Bhai; Konstantinos Billis; Denise Carvalho-Silva; Carla A. Cummins; Peter Clapham; Laurent Gil; Carlos García-Girón; et al. (Nucleic Acids Res., 2017)

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. - Claire Bertelli; Matthew R. Laird; Kelly P. Williams; Britney Y. Lau; Gemma Hoad; Geoffrey L. Winsor; Fiona S. L. Brinkman (Nucleic Acids Res., 2017)

Ensembl 2018. - Daniel R. Zerbino; Premanand Achuthan; Wasiu A. Akanni; M. Ridwan Amode; Daniel Barrell; Jyothish Bhai; Konstantinos Billis; Carla A. Cummins; Astrid Gall; Carlos García-Girón; Laurent Gil; Leo Gordon; et al. (Nucleic Acids Res., 2018)

Ensembl 2019. - Fiona Cunningham; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; M. Ridwan Amode; Irina M. Armean; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; Carla A. Cummins; Claire Davidson; et al. (Nucleic Acids Res., 2019)

Refget: standardized access to reference sequences. - Andrew D. Yates; Jeremy Adams; Somesh Chaturvedi; Robert Davies; Matthew R. Laird; Rasko Leinonen; Rishi Nag; Nathan C. Sheffield; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations. - Wing Yin Venus Lau; Gemma Hoad; Vivian Jin; Geoffrey L. Winsor; Ashmeet Madyan; Kristen L. Gray; Matthew R. Laird; Raymond Lo; Fiona S. L. Brinkman (Nucleic Acids Res., 2021)