The Combinatorial Partitioning Method. - Matthew R. Nelson; Sharon L. R. Kardia; Charles F. Sing (CPM, 2000)

Multi-Population Classical HLA Type Imputation. - Alexander T. Dilthey; Stephen Leslie; Loukas Moutsianas; Judong Shen; Charles Cox; Matthew R. Nelson; Gil McVean (PLoS Comput. Biol., 2013)

Comparing variant calling algorithms for target-exon sequencing in a large sample. - Yancy Lo; Hyun Min Kang; Matthew R. Nelson; Mohammad I. Othman; Stephanie L. Chissoe; Margaret G. Ehm; Gonçalo R. Abecasis; Sebastian Zöllner (BMC Bioinform., 2015)

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. - Mulin Jun Li; Zipeng Liu; Panwen Wang; Maria P. Wong; Matthew R. Nelson; Jean-Pierre A. Kocher; Meredith Yeager; Pak Chung Sham; Stephen J. Chanock; Zhengyuan Xia; Junwen Wang (Nucleic Acids Res., 2016)

STOPGAP: a database for systematic target opportunity assessment by genetic association predictions. - Judong Shen; Kijoung Song; Andrew J. Slater; Enrico Ferrero; Matthew R. Nelson (Bioinform., 2017)

Predicting clinically promising therapeutic hypotheses using tensor factorization. - Jin Yao; Mark Hurle; Matthew R. Nelson; Pankaj Agarwal (BMC Bioinform., 2019)