The Companion Project - A Wearable Computing Device for the Patient for Reducing Medical Errors and Improving Patient Care. - Matthew Scotch; George Hripcsak (AMIA, 2002)

The sublanguage of cross-coverage. - Peter D. Stetson; Stephen B. Johnson; Matthew Scotch; George Hripcsak (AMIA, 2002)

SOVAT: Spatial OLAP Visualization and Analysis Tool. - Matthew Scotch; Bambang Parmanto (HICSS, 2005)

Development of SOVAT: A numerical-spatial decision support system for community health assessment research. - Matthew Scotch; Bambang Parmanto (Int. J. Medical Informatics, 2006)

Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. - Matthew Scotch; Kevin Y. Yip; Kei-Hoi Cheung (J. Am. Medical Informatics Assoc., 2008)

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. - Kei-Hoi Cheung; Kevin Y. Yip; Jeffrey P. Townsend; Matthew Scotch (J. Biomed. Informatics, 2008)

Evaluation of SOVAT: An OLAP-GIS decision support system for community health assessment data analysis. - Matthew Scotch; Bambang Parmanto; Valerie Monaco (BMC Medical Informatics Decis. Mak., 2008)

Brief review: Use of statistical analysis in the biomedical informatics literature. - Matthew Scotch; Mona Duggal; Cynthia Brandt; Zhenqui Lin; Richard N. Shiffman (J. Am. Medical Informatics Assoc., 2010)

The Yale cTAKES extensions for document classification: architecture and application. - Vijay Garla; Vincent Lo Re III; Zachariah Dorey-Stein; Farah Kidwai; Matthew Scotch; Julie A. Womack; Amy Justice; Cynthia Brandt (J. Am. Medical Informatics Assoc., 2011)

Enhancing phylogeography by improving geographical information from GenBank. - Matthew Scotch; Indra Neil Sarkar; Changjiang Mei; Robert Leaman; Kei-Hoi Cheung; Pierina Ortiz; Ashutosh Singraur; Graciela Gonzalez 001 (J. Biomed. Informatics, 2011)

Creating a MRSA Ontology to Support Categorization of MRSA Infections. - Susana B. Martins; Samson W. Tu; Richard Martinello; Michael Rubin; Philip Foulis; Stephen Luther; Tyler Forbush; Matthew Scotch; Brad Doebbelling; Mary K. Goldstein (AMIA, 2013)

Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look? - R. Braithwaite; Matthew Scotch (BMC Medical Informatics Decis. Mak., 2013)

Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. - Tasnia Tahsin; Robert Rivera; Rachel Beard; Rob Lauder; Davy Weissenbacher; Matthew Scotch; Garrick L. Wallstrom; Graciela Gonzalez 001 (BioNLP@ACL, 2014)

Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks. - Michael J. Kane; Natalie Price; Matthew Scotch; Peter Rabinowitz (BMC Bioinform., 2014)

Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance. - Daniel Magee; Rachel Beard; Matthew Scotch (AMIA, 2015)

Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. - Davy Weissenbacher; Tasnia Tahsin; Rachel Beard; Mari Figaro; Robert Rivera; Matthew Scotch; Graciela Gonzalez 001 (Bioinform., 2015)

Session Introduction. - Michael J. Paul; Abeed Sarker; John S. Brownstein; Azadeh Nikfarjam; Matthew Scotch; Karen L. Smith; Graciela Gonzalez-Hernandez (PSB, 2016)

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. - Tasnia Tahsin; Davy Weissenbacher; Robert Rivera; Rachel Beard; Mari Firago; Garrick L. Wallstrom; Matthew Scotch; Graciela Gonzalez 001 (J. Am. Medical Informatics Assoc., 2016)

CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. - Arjun Magge; Matthew Scotch; Graciela Gonzalez 001 (SMM4H@AMIA, 2017)

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. - Tasnia Tahsin; Davy Weissenbacher; Demetrius Jones-Shargani; Daniel Magee; Matteo Vaiente; Graciela Gonzalez 001; Matthew Scotch (Database J. Biol. Databases Curation, 2017)

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. - Daniel Magee; Marc A. Suchard; Matthew Scotch (PLoS Comput. Biol., 2017)

Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. - Arjun Magge; Matthew Scotch; Graciela Gonzalez-Hernandez (Medication and Adverse Drug Event Detection, 2018)

Deep neural networks and distant supervision for geographic location mention extraction. - Arjun Magge; Davy Weissenbacher; Abeed Sarker; Matthew Scotch; Graciela Gonzalez-Hernandez (Bioinform., 2018)

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. - Tasnia Tahsin; Davy Weissenbacher; Karen O'Connor; Arjun Magge; Matthew Scotch; Graciela Gonzalez-Hernandez (Bioinform., 2018)

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. - Arjun Magge; Davy Weissenbacher; Abeed Sarker; Matthew Scotch; Graciela Gonzalez-Hernandez (PSB, 2019)

SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. - Davy Weissenbacher; Arjun Magge; Karen O'Connor; Matthew Scotch; Graciela Gonzalez-Hernandez (SemEval@NAACL-HLT, 2019)

GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. - Arjun Magge; Davy Weissenbacher; Karen O'Connor; Tasnia Tahsin; Graciela Gonzalez-Hernandez; Matthew Scotch (Bioinform., 2020)

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants. - Rafaela S. Fontenele; Simona Kraberger; James Hadfield; Erin M. Driver; Devin Bowes; LaRinda A. Holland; Temitope O. Faleye; Sangeet Adhikari; Rahul Kumar; Rosa Inchausti; Wydale K. Holmes; Stephanie Deitrick; et al. (AMIA, 2021)

Towards Standards for Undergraduate Health Informatics Education. - Christina Eldredge; Saif Khairat; Sue S. Feldman; Matthew Scotch (AMIA, 2022)

Foundational domains and competencies for baccalaureate health informatics education. - Saif S. Khairat; Sue S. Feldman; Arif Rana; Mohammad Faysel; Saptarshi Purkayastha; Matthew Scotch; Christina Eldredge (J. Am. Medical Informatics Assoc., 2023)

Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread. - Andreas Züfle; Flora D. Salim; Taylor Anderson 001; Matthew Scotch; Li Xiong 001; Kacper Sokol; Hao Xue 001; Ruochen Kong; David J. Heslop; Hye-Young Paik; C. Raina MacIntyre (ACM Trans. Spatial Algorithms Syst., 2024)

Evaluating the Bias in LLMs for Surveying Opinion and Decision Making in Healthcare. - Yonchanok Khaokaew; Flora D. Salim; Andreas Züfle; Hao Xue 001; Taylor Anderson 001; C. Raina MacIntyre; Matthew Scotch; David J. Heslop (CoRR, 2025)

A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models. - Haley Stone; Jing Du; Hao Xue 001; Matthew Scotch; David J. Heslop; Andreas Züfle; C. Raina MacIntyre; Flora Salim (CoRR, 2025)