Uncertainty estimation of predictions of peptides' chromatographic retention times in shotgun proteomics. - Heydar Maboudi Afkham; Xuanbin Qiu; Matthew The; Lukas Käll (Bioinform., 2017)

Statistical and machine learning methods to analyze large-scale mass spectrometry data. - Matthew The (2018)

ProteomicsDB: toward a FAIR open-source resource for life-science research. - Ludwig Lautenbacher; Patroklos Samaras; Julian Müller 007; Andreas Grafberger; Marwin Shraideh; Johannes Rank; Simon T. Fuchs; Tobias K. Schmidt; Matthew The; Christian Dallago; Holger Wittges; Burkhard Rost; et al. (Nucleic Acids Res., 2022)