STAR - Sparsity through Automated Rejection. - Robert Burbidge; Matthew W. B. Trotter; Bernard F. Buxton; Sean B. Holden (IWANN (1), 2001)

Drug Design by Machine Learning: Support Vector Machines for Pharmaceutical Data Analysis. - Robert Burbidge; Matthew W. B. Trotter; Bernard F. Buxton; Sean B. Holden (Comput. Chem., 2002)

Unsupervised Thresholding of Affymetrix Microarray Data. - Matthew W. B. Trotter; Bernard F. Buxton (ICCTA, 2007)

BloodExpress: a database of gene expression in mouse haematopoiesis. - Diego Miranda-Saavedra; Subhajyoti De; Matthew W. B. Trotter; Sarah A. Teichmann; Berthold Göttgens (Nucleic Acids Res., 2009)

Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. - Lisa M. Breckels; Sean B. Holden; David Wojnar; Claire M. Mulvey; Andy Christoforou; Arnoud Groen; Matthew W. B. Trotter; Oliver Kohlbacher; Kathryn S. Lilley; Laurent Gatto (PLoS Comput. Biol., 2016)

Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation. - Irina M. Armean; Kathryn S. Lilley; Matthew W. B. Trotter; Nicholas Charles Victor Pilkington; Sean B. Holden (Bioinform., 2018)

DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling. - Francisco J. Campos-Laborie; Alberto Risueño; M. Ortiz-Estévez; B. Rosón-Burgo; Conrad Droste; Celia Fontanillo; Remco Loos; Jose Manuel Sánchez-Santos; Matthew W. B. Trotter; Javier De Las Rivas (Bioinform., 2019)