Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars. - Yizhi Cai; Matthew W. Lux; Laura Adam; Jean Peccoud (PLoS Comput. Biol., 2009)

Co-Design in Synthetic Biology: A System-Level Analysis of the Development of an Environmental Sensing Device. - David A. Ball; Matthew W. Lux; Russell R. Graef; Matthew W. Peterson; Jane D. Valenti; John Dileo; Jean Peccoud (Pacific Symposium on Biocomputing, 2010)

PLoS Computational Biology Conference Postcards from PSB 2010. - Ruchira S. Datta; Matthew W. Lux; Philip E. Bourne (PLoS Comput. Biol., 2010)

barCoder: a tool to generate unique, orthogonal genetic tags for qPCR detection. - Casey B. Bernhards; Matthew W. Lux; Sarah E. Katoski; Tyler D. P. Goralski; Alvin T. Liem; Henry S. Gibbons (BMC Bioinform., 2021)