Fuzzy clustering of gene expression data. - Matthias E. Futschik; Nikola K. Kasabov (FUZZ-IEEE, 2002)

Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue. - Matthias E. Futschik; Anthony Reeve; Nikola K. Kasabov (Artif. Intell. Medicine, 2003)

OLIN: optimized normalization, visualization and quality testing of two-channel microarray data. - Matthias E. Futschik; Toni Crompton (Bioinform., 2005)

Noise-robust Soft Clustering of Gene Expression Time-course Data. - Matthias E. Futschik; Bronwyn Carlisle (J. Bioinform. Comput. Biol., 2005)

Comparison of Human Protein-Protein Interaction Maps. - Matthias E. Futschik; Gautam Chaurasia; Erich E. Wanker; Hanspeter Herzel (German Conference on Bioinformatics, 2006)

DNA Motifs and Sequence Periodicities. - Lokesh Kumar; Matthias E. Futschik; Hanspeter Herzel (Silico Biol., 2006)

Are we Overestimating the Number of Cell-Cycling Genes? The Impact of Background Models. - Matthias E. Futschik; Hanspeter Herzel (German Conference on Bioinformatics, 2007)

Comparison of human protein-protein interaction maps. - Matthias E. Futschik; Gautam Chaurasia; Hanspeter Herzel (Bioinform., 2007)

Flexible web-based integration of distributed large-scale human protein interaction maps. - Gautam Chaurasia; Yasir Iqbal; Christian Hänig; Hanspeter Herzel; Erich E. Wanker; Matthias E. Futschik (J. Integr. Bioinform., 2007)

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network . - Matthias E. Futschik; Gautam Chaurasia; Anna Tschaut; Jenny Russ; M. Madan Babu; Hanspeter Herzel (J. Integr. Bioinform., 2007)

UniHI: an entry gate to the human protein interactome. - Gautam Chaurasia; Yasir Iqbal; Christian Hänig; Hanspeter Herzel; Erich E. Wanker; Matthias E. Futschik (Nucleic Acids Res., 2007)

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. - Matthias E. Futschik; Hanspeter Herzel (Bioinform., 2008)

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome. - Gautam Chaurasia; Soniya Malhotra; Jenny Russ; Sigrid Schnoegl; Christian Hänig; Erich E. Wanker; Matthias E. Futschik (Nucleic Acids Res., 2009)

Inferring modules from human protein interactome classes. - Elisabetta Marras; Antonella Travaglione; Gautam Chaurasia; Matthias E. Futschik; Enrico Capobianco (BMC Syst. Biol., 2010)

UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks. - Ravi Kiran Reddy Kalathur; José Pedro Pinto; Miguel A. Hernández-Prieto; Rui S. R. Machado; Dulce Almeida; Gautam Chaurasia; Matthias E. Futschik (Nucleic Acids Res., 2014)

StemCellNet: an interactive platform for network-oriented investigations in stem cell biology. - José P. Pinto; Ravi Kiran Reddy Kalathur; Rui S. R. Machado; Joana M. Xavier; José Bragança; Matthias E. Futschik (Nucleic Acids Res., 2014)

StemChecker: a web-based tool to discover and explore stemness signatures in gene sets. - José P. Pinto; Ravi Kiran Reddy Kalathur; Daniel V. Oliveira 001; Tânia Barata; Rui S. R. Machado; Susana Machado; Ivette Pacheco-Leyva; Isabel Duarte; Matthias E. Futschik (Nucleic Acids Res., 2015)

StemMapper: a curated gene expression database for stem cell lineage analysis. - José P. Pinto; Rui S. R. Machado; Ramiro Magno; Daniel V. Oliveira 001; Susana Machado; Raquel P. Andrade; José Bragança; Isabel Duarte; Matthias E. Futschik (Nucleic Acids Res., 2018)