Molecular simulations of peptides and proteins with Molecular Fragment Dynamics (MFD). - Andreas Truszkowski; Annamaria Fiethen; Hubert Kuhn; Achim Zielesny; Matthias Epple (J. Cheminformatics, 2013)

A molecular fragment cheminformatics roadmap for mesoscopic simulation. - Andreas Truszkowski; Mirco Daniel; Hubert Kuhn; Stefan Neumann 001; Christoph Steinbeck; Achim Zielesny; Matthias Epple (J. Cheminformatics, 2014)

Molecular fragment dynamics study on the water-air interface behavior of non-ionic polyoxyethylene alkyl ether surfactants. - Andreas Truszkowski; Annamaria Fiethen; Hubert Kuhn; Thomas Wiebringhaus; Achim Zielesny; Matthias Epple (J. Cheminformatics, 2014)

Mesoscopic Simulation of Phospholipid Membranes, Peptides, and Proteins with Molecular Fragment Dynamics. - Andreas Truszkowski; Karina van den Broek; Hubert Kuhn; Achim Zielesny; Matthias Epple (J. Chem. Inf. Model., 2015)

SPICES: a particle-based molecular structure line notation and support library for mesoscopic simulation. - Karina van den Broek; Mirco Daniel; Matthias Epple; Hubert Kuhn; Jonas Schaub; Achim Zielesny (J. Cheminformatics, 2018)

MFsim - an open Java all-in-one rich-client simulation environment for mesoscopic simulation. - Karina van den Broek; Mirco Daniel; Matthias Epple; Jan-Mathis Hein; Hubert Kuhn; Stefan Neumann 001; Andreas Truszkowski; Achim Zielesny (J. Cheminformatics, 2020)

Quantitative Estimation of Cyclotide-Induced Bilayer Membrane Disruption by Lipid Extraction with Mesoscopic Simulation. - Karina van den Broek; Matthias Epple; Lisa Sophie Kersten; Hubert Kuhn; Achim Zielesny (J. Chem. Inf. Model., 2021)

Artificial Scanning Electron Microscopy Images Created by Generative Adversarial Networks from Simulated Particle Assemblies. - Jonas Bals; Matthias Epple (Adv. Intell. Syst., 2023)