Synthetic biology - putting engineering into biology. - Matthias Heinemann; Sven Panke (Bioinform., 2006)

Systematic assignment of thermodynamic constraints in metabolic network models. - Anne Kümmel; Sven Panke; Matthias Heinemann (BMC Bioinform., 2006)

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data. - Nicola Zamboni; Anne Kümmel; Matthias Heinemann (BMC Bioinform., 2008)

A divide-and-conquer approach to analyze underdetermined biochemical models. - Oliver Kotte; Matthias Heinemann (Bioinform., 2009)

Nutritional Systems Biology Modeling: From Molecular Mechanisms to Physiology. - Albert A. de Graaf; Andreas P. Freidig; Baukje De Roos; Neema Jamshidi; Matthias Heinemann; Johan A. C. Rullmann; Kevin D. Hall; Martin Adiels; Ben van Ommen (PLoS Comput. Biol., 2009)

Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters. - Roi Adadi; Benjamin Volkmer; Ron Milo; Matthias Heinemann; Tomer Shlomi (PLoS Comput. Biol., 2012)

System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes. - Stefan J. Jol; Anne Kümmel; Marco Terzer; Jörg Stelling; Matthias Heinemann (PLoS Comput. Biol., 2012)