STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. - Matthias Heinig; Dmitrij Frishman (Nucleic Acids Res., 2004)

MACAT - microarray chromosome analysis tool. - Joern Toedling; Sebastian Schmeier; Matthias Heinig; Benjamin Georgi; Stefan Roepcke (Bioinform., 2005)

New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach. - Enrico Petretto; Leonardo Bottolo; Sarah R. Langley; Matthias Heinig; Chris McDermott-Roe; Rizwan Sarwar; Michal Pravenec; Norbert Hübner; Timothy J. Aitman; Stuart A. Cook; Sylvia Richardson (PLoS Comput. Biol., 2010)

histoneHMM: Differential analysis of histone modifications with broad genomic footprints. - Matthias Heinig; Maria Colomé-Tatché; Aaron Taudt; Carola Rintisch; Sebastian Schafer; Michal Pravenec; Norbert Hübner; Martin Vingron; Frank Johannes (BMC Bioinform., 2015)

Comparison of Cox Model Methods in A Low-dimensional Setting with Few Events. - Francisco M. Ojeda; Christian Müller 017; Daniela Börnigen; David-Alexandre Trégouët; Arne Schillert; Matthias Heinig; Tanja Zeller; Renate B. Schnabel (Genom. Proteom. Bioinform., 2016)

DeepSom: a CNN-based approach to somatic variant calling in WGS samples without a matched normal. - Sergey Vilov; Matthias Heinig (Bioinform., 2023)