Aligning chemical structure diagrams with local search. - Matthias Hilbig 001; Matthias Rarey (J. Cheminformatics, 2012)

MONA - Interactive manipulation of molecule collections. - Matthias Hilbig 001; Sascha Urbaczek; Inken Groth; Stefan Heuser; Matthias Rarey (J. Cheminformatics, 2013)

An integrated approach to knowledge-driven structure-based virtual screening. - Angela M. Henzler; Sascha Urbaczek; Matthias Hilbig 001; Matthias Rarey (J. Comput. Aided Mol. Des., 2014)

Discriminative Chemical Patterns: Automatic and Interactive Design. - Stefan Bietz; Karen T. Schomburg; Matthias Hilbig 001; Matthias Rarey (J. Chem. Inf. Model., 2015)

MONA 2: A Light Cheminformatics Platform for Interactive Compound Library Processing. - Matthias Hilbig 001; Matthias Rarey (J. Chem. Inf. Model., 2015)

UNICON: A Powerful and Easy-to-Use Compound Library Converter. - Kai Sommer; Nils-Ole Friedrich; Stefan Bietz; Matthias Hilbig 001; Therese Inhester; Matthias Rarey (J. Chem. Inf. Model., 2016)

Index-Based Searching of Interaction Patterns in Large Collections of Protein-Ligand Interfaces. - Therese Inhester; Stefan Bietz; Matthias Hilbig 001; Robert Schmidt 002; Matthias Rarey (J. Chem. Inf. Model., 2017)

Grafisches Ausrichten von Strukturdiagrammen und interaktive Navigation großer Moleküldatensätze (Graphical alignment of chemical structure diagrams and interactive navigation of large molecule datasets) - Matthias Hilbig 001 (2019)