Learning cooperative assembly with the graph representation of a state-action space. - Markus Ferch; Matthias Höchsmann; Jianwei Zhang 001 (IROS, 2002)

Visual guided grasping and generalization using self-valuing learning. - Bernd Rössler; Jianwei Zhang 001; Matthias Höchsmann (IROS, 2002)

Local Similarity in RNA Secondary Structures. - Matthias Höchsmann; Thomas Töller; Robert Giegerich; Stefan Kurtz (CSB, 2003)

Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. - Matthias Höchsmann; Björn Voss; Robert Giegerich (IEEE ACM Trans. Comput. Biol. Bioinform., 2004)

The tree alignment model : algorithms, implementations and applications for the analysis of RNA secondary structures - Matthias Höchsmann (2005)