Periscope/GQ: a graph querying toolkit. - Yuanyuan Tian 001; Jignesh M. Patel; Viji Nair; Sebastian Martini; Matthias Kretzler (Proc. VLDB Endow., 2008)

Network analysis of genes regulated in renal diseases: implications for a molecular-based classification. - Suresh K. Bhavnani; Felix Eichinger; Sebastian Martini; Paul Saxman; H. V. Jagadish; Matthias Kretzler (BMC Bioinform., 2009)

The NIH National Center for Integrative Biomedical Informatics (NCIBI). - Brian D. Athey; James D. Cavalcoli; H. V. Jagadish; Gilbert S. Omenn; Barbara Mirel; Matthias Kretzler; Charles F. Burant; Raphael D. Isokpehi; Charles DeLisi (J. Am. Medical Informatics Assoc., 2012)

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data. - Ridvan Eksi; Hongdong Li; Rajasree Menon; Yuchen Wen; Gilbert S. Omenn; Matthias Kretzler; Yuanfang Guan (PLoS Comput. Biol., 2013)

KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration. - Yongqun He; Becky Steck; Edison Ong; Laura Mariani; Chrysta Lienczewski; Ulysses J. Balis; Matthias Kretzler; Jonathan Himmelfarb; John F. Bertram; Evren U. Azeloglu; Ravi Iyengar; Deborah Hoshizaki; et al. (ICBO, 2018)

OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis. - Yongqun He; Edison Ong; Jennifer Schaub; Frederick Dowd; John F. O'Toole; Anastasios Siapos; Christian G. Reich; Sarah Seager; Ling Wang 001; Hong Yu 014; Jie Zheng 001; Christian J. Stoeckert Jr.; et al. (ICBO, 2019)

Ontology-based Modeling, Representation, and Analysis of Biomarkers in Healthy and Disease Kidney Tissue. - Yingtong Liu; Wenjun Ju; Becky Steck; Sanjay Jain; Matthias Kretzler; Yongqun He (ICBO, 2021)

Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms. - Hongyang Li; Ridvan Eksi; Daiyao Yi; Bradley Godfrey; Lisa R. Mathew; Christopher L. O'Connor; Markus Bitzer; Matthias Kretzler; Rajasree Menon; Yuanfang Guan (PLoS Comput. Biol., 2022)