Computational, experimental analysis reveals a novel Src family kinase in the C. elegans genome. - Akhilesh Pandey; Suraj Peri; Colin Thacker; Chery A. Whipple; John J. Collins; Matthias Mann 002 (Bioinform., 2003)

NOPdb: Nucleolar Proteome Database. - Anthony Kar Lun Leung; Laura Trinkle-Mulcahy; Yun Wah Lam; Jens S. Andersen; Matthias Mann 002; Angus I. Lamond (Nucleic Acids Res., 2006)

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. - Yanling Zhang; Yong Zhang 036; Jun Adachi; Jesper V. Olsen; Rong Shi; Gustavo de Souza; Erica Pasini; Leonard J. Foster; Boris Macek; Alexandre Zougman; Chanchal Kumar; Jacek R. Wisniewski; et al. (Nucleic Acids Res., 2007)

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. - Nuno Bandeira; Jesper V. Olsen; Matthias Mann 002; Pavel A. Pevzner (ISMB, 2008)

MAPU 2.0: high-accuracy proteomes mapped to genomes. - Florian Gnad; Mario Oroshi; Ewan Birney; Matthias Mann 002 (Nucleic Acids Res., 2009)

Predicting post-translational lysine acetylation using support vector machines. - Florian Gnad; Shubin Ren; Chunaram Choudhary; Jürgen Cox; Matthias Mann 002 (Bioinform., 2010)

PHOSIDA 2011: the posttranslational modification database. - Florian Gnad; Jeremy Gunawardena; Matthias Mann 002 (Nucleic Acids Res., 2011)

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data. - Jürgen Cox; Matthias Mann 002 (BMC Bioinform., 2012)

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins. - Stefka Tyanova; Jürgen Cox; Jesper V. Olsen; Matthias Mann 002; Dmitrij Frishman (PLoS Comput. Biol., 2013)

IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data. - Marcel Mischnik; Francesca Sacco; Jürgen Cox; Hans-Christoph Schneider; Matthias Schäfer; Manfred Hendlich; Daniel Crowther; Matthias Mann 002; Thomas Klabunde (Bioinform., 2016)

Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry. - Tikira Temu; Matthias Mann 002; Markus Räschle; Jürgen Cox (Bioinform., 2016)