tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks. - Matthias P. Gerstl; Christian Jungreuthmayer; Jürgen Zanghellini (Bioinform., 2015)

Exact quantification of cellular robustness in genome-scale metabolic networks. - Matthias P. Gerstl; Steffen Klamt; Christian Jungreuthmayer; Jürgen Zanghellini (Bioinform., 2016)

CHOmine: an integrated data warehouse for CHO systems biology and modeling. - Matthias P. Gerstl; Michael Hanscho; David E. Ruckerbauer; Jürgen Zanghellini; Nicole Borth (Database J. Biol. Databases Curation, 2017)

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. - Steffen Klamt; Georg Regensburger; Matthias P. Gerstl; Christian Jungreuthmayer; Stefan Schuster; Radhakrishnan Mahadevan; Jürgen Zanghellini; Stefan Müller 009 (PLoS Comput. Biol., 2017)

Flux tope analysis: studying the coordination of reaction directions in metabolic networks. - Matthias P. Gerstl; Stefan Müller 009; Georg Regensburger; Jürgen Zanghellini (Bioinform., 2019)