New methods and algorithms for the accurate, real-time motion analysis of the left ventricle with MRI-tagging. - Cyril F. Allouche; Shérif Makram-Ebeid; Matthias Stuber; Nicholas Ayache; Herve Delingette (CARS, 2001)

ZHARP: Three-Dimensional Motion Tracking from a Single Image Plane. - Khaled Z. Abd-Elmoniem; Matthias Stuber; Nael F. Osman; Jerry L. Prince (IPMI, 2005)

Identifying different heart tissues from combined functional and viability MRI images. - El-Sayed Ibrahim; Amy Spooner; Robert G. Weiss; Matthias Stuber; Dara L. Kraitchman; Nael F. Osman (ISBI, 2006)

Multi-slice Three-Dimensional Myocardial Strain Tensor Quantification Using z HARP. - Khaled Z. Abd-Elmoniem; Matthias Stuber; Jerry L. Prince (IPMI, 2007)

Direct three-dimensional myocardial strain tensor quantification and tracking using zHARP. - Khaled Z. Abd-Elmoniem; Matthias Stuber; Jerry L. Prince (Medical Image Anal., 2008)

MRI-based prostate brachytherapy seed localization. - Nathanael Kuo; Junghoon Lee; Clare M. Tempany; Matthias Stuber; Jerry L. Prince (ISBI, 2010)

Vessel centerline tracking and boundary segmentation in coronary MRA with minimal manual interaction. - Sahar Soleimanifard; Michael Schär; Allison G. Hays; Robert G. Weiss; Matthias Stuber; Jerry L. Prince (ISBI, 2012)

Time-Dependent Deep Image Prior for Dynamic MRI. - Kyong Hwan Jin; Harshit Gupta; Jerome Yerly; Matthias Stuber; Michael Unser (CoRR, 2019)

T2 Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions. - Hélène Lajous; Tom Hilbert; Christopher W. Roy; Sébastien Tourbier; Priscille de Dumast; Thomas Yu; Jean-Philippe Thiran; Jean-Baptiste Ledoux; Davide Piccini; Patric Hagmann; Reto Meuli; Tobias Kober; et al. (MICCAI (2), 2020)

Free-running SIMilarity-Based Angiography (SIMBA) for simplified anatomical MR imaging of the heart. - John Heerfordt; Kevin K. Whitehead; Jessica A. M. Bastiaansen; Lorenzo Di Sopra; Christopher W. Roy; Jérôme Yerly; Bastien Milani; Mark A. Fogel; Matthias Stuber; Davide Piccini (CoRR, 2020)

Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo (HASTE) of the Fetal Brain: Application to Super-Resolution Reconstruction. - Hélène Lajous; Tom Hilbert; Christopher W. Roy; Sébastien Tourbier; Priscille de Dumast; Yasser Alemán-Gómez; Thomas Yu; Hamza Kebiri; Jean-Baptiste Ledoux; Patric Hagmann; Reto Meuli; Vincent Dunet; et al. (UNSURE/PIPPI@MICCAI, 2021)

FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom. - Hélène Lajous; Christopher W. Roy; Tom Hilbert; Priscille de Dumast; Sébastien Tourbier; Yasser Alemán-Gómez; Jérôme Yerly; Thomas Yu; Hamza Kebiri; Kelly Payette; Jean-Baptiste Ledoux; Reto Meuli; et al. (CoRR, 2021)

Time-Dependent Deep Image Prior for Dynamic MRI. - Jaejun Yoo 001; Kyong Hwan Jin; Harshit Gupta; Jérôme Yerly; Matthias Stuber; Michael Unser (IEEE Trans. Medical Imaging, 2021)

Distributed Memory-Efficient Physics-Guided Deep Learning Reconstruction for Large-Scale 3d Non-Cartesian MRI. - Chi Zhang 057; Davide Piccini; Ömer Burak Demirel; Gabriele Bonanno; Burhaneddin Yaman; Matthias Stuber; Steen Moeller; Mehmet Akçakaya (ISBI, 2022)

ALMA: a mathematics-driven approach for determining tuning parameters in generalized LASSO problems, with applications to MRI. - Gianluca Giacchi; Isidoros Iakovidis; Bastien Milani; Matthias Stuber; Micah M. Murray; Benedetta Franceschiello (CoRR, 2024)

5D free-running, reconstruction, variable projection, ADMM, VPAL. - Yitong Yang; Muhammad Naeem; Marly van Assen; Jerome Yerly; Davide Piccini; Matthias Stuber; John Oshinski; Matthias Chung (CoRR, 2025)