Existential arc consistency: Getting closer to full arc consistency in weighted CSPs. - Simon de Givry; Federico Heras; Matthias Zytnicki; Javier Larrosa (IJCAI, 2005)

A new local consistency for weighted CSP dedicated to long domains. - Matthias Zytnicki; Christine Gaspin; Thomas Schiex (SAC, 2006)

Recherche d'ARN non-codants par réseaux de contraintes pondérées. (Non-coding RNA localization using weighted constraint network). - Matthias Zytnicki (2007)

Virtual Arc Consistency for Weighted CSP. - Martin C. Cooper; Simon de Givry; Martí Sánchez-Fibla; Thomas Schiex; Matthias Zytnicki (AAAI, 2008)

DARN! A Weighted Constraint Solver for RNA Motif Localization. - Matthias Zytnicki; Christine Gaspin; Thomas Schiex (Constraints An Int. J., 2008)

Bounds Arc Consistency for Weighted CSPs. - Matthias Zytnicki; Christine Gaspin; Simon de Givry; Thomas Schiex (J. Artif. Intell. Res., 2009)

Soft arc consistency revisited. - Martin C. Cooper; Simon de Givry; Martí Sánchez-Fibla; Thomas Schiex; Matthias Zytnicki; Tomás Werner (Artif. Intell., 2010)

Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. - Sophie Schbath; Véronique Martin; Matthias Zytnicki; Julien Fayolle; Valentin Loux; Jean-François Gibrat (J. Comput. Biol., 2012)

Efficient comparison of sets of intervals with NC-lists. - Matthias Zytnicki; YuFei Luo; Hadi Quesneville (Bioinform., 2013)

Tedna: a transposable element de novo assembler. - Matthias Zytnicki; Eduard Akhunov; Hadi Quesneville (Bioinform., 2014)

Anytime Hybrid Best-First Search with Tree Decomposition for Weighted CSP. - David Allouche; Simon de Givry; George Katsirelos; Thomas Schiex; Matthias Zytnicki (CP, 2015)

Multi-language evaluation of exact solvers in graphical model discrete optimization. - Barry Hurley 001; Barry O'Sullivan; David Allouche; George Katsirelos; Thomas Schiex; Matthias Zytnicki; Simon de Givry (Constraints An Int. J., 2016)

mmquant: how to count multi-mapping reads? - Matthias Zytnicki (BMC Bioinform., 2017)

Méthodes informatiques pour l'analyse de données de séquençage de petits ARN. - Matthias Zytnicki (2022)

srnaMapper: an optimal mapping tool for sRNA-Seq reads. - Matthias Zytnicki; Christine Gaspin (BMC Bioinform., 2022)

A comprehensive review and benchmark of differential analysis tools for Hi-C data. - Elise Jorge; Sylvain Foissac; Pierre Neuvial; Matthias Zytnicki; Nathalie Vialaneix (Briefings Bioinform., 2025)