DaMiRseq - an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification. - Mattia Chiesa; Gualtiero I. Colombo; Luca Piacentini (Bioinform., 2018)

CBS-miRSeq: A comprehensive tool for accurate and extensive analyses of microRNA-sequencing data. - Rupesh K. Kesharwani; Mattia Chiesa; Riccardo Bellazzi; Gualtiero I. Colombo (Comput. Biol. Medicine, 2019)

GARS: Genetic Algorithm for the identification of a Robust Subset of features in high-dimensional datasets. - Mattia Chiesa; Giada Maioli; Gualtiero I. Colombo; Luca Piacentini (BMC Bioinform., 2020)

A Topological Data Analysis Framework for Computational Phenotyping. - Giuseppe Albi; Alessia Gerbasi; Mattia Chiesa; Gualtiero I. Colombo; Riccardo Bellazzi; Arianna Dagliati (AIME, 2023)

A token-mixer architecture for CAD-RADS classification of coronary stenosis on multiplanar reconstruction CT images. - Marco Penso; Sara Moccia; Enrico G. Caiani; Gloria Caredda; Maria Luisa Lampus; Maria Ludovica Carerj; Mario Babbaro; Mauro Pepi; Mattia Chiesa; Gianluca Pontone (Comput. Biol. Medicine, 2023)

CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline. - Alessia Gerbasi; Arianna Dagliati; Giuseppe Albi; Mattia Chiesa; Daniele Andreini; Andrea Baggiano; Saima Mushtaq; Gianluca Pontone; Riccardo Bellazzi; Gualtiero Colombo 002 (Comput. Methods Programs Biomed., 2024)

Combining Clinical and Gene Expression Variables via Knowledge Graph Embedding for Prediction of Coronary Artery Stenosis. - Giuseppe Albi; Arianna Dagliati; Chiara Vavassori; Laura Pisani; Mattia Chiesa; Luca Piacentini; Saima Mushtaq; Gianluca Pontone; Riccardo Bellazzi; Gualtiero I. Colombo (AIME (1), 2025)