Insights on protein thermal stability: a graph representation of molecular interactions. - Mattia Miotto; Pier Paolo Olimpieri; Lorenzo Di Rienzo; Francesco Ambrosetti; Pietro Corsi; Rosalba Lepore; Gian Gaetano Tartaglia; Edoardo Milanetti (Bioinform., 2019)

Competing endogenous RNA crosstalk at system level. - Mattia Miotto; Enzo Marinari; Andrea De Martino (PLoS Comput. Biol., 2019)

Simulated Epidemics in 3D Protein Structures to Detect Functional Properties. - Mattia Miotto; Lorenzo Di Rienzo; Pietro Corsi; Giancarlo Ruocco; Domenico Raimondo; Edoardo Milanetti (J. Chem. Inf. Model., 2020)

TOLOMEO, a Novel Machine Learning Algorithm to Measure Information and Order in Correlated Networks and Predict Their State. - Mattia Miotto; Lorenzo Monacelli (Entropy, 2021)

Thermometer: a webserver to predict protein thermal stability. - Mattia Miotto; Alexandros Armaos; Lorenzo Di Rienzo; Giancarlo Ruocco; Edoardo Milanetti; Gian Gaetano Tartaglia (Bioinform., 2022)

Compact Assessment of Molecular Surface Complementarities Enhances Neural Network-Aided Prediction of Key Binding Residues. - Greta Grassmann; Lorenzo Di Rienzo; Giancarlo Ruocco; Mattia Miotto; Edoardo Milanetti (J. Chem. Inf. Model., 2025)

Breaking the bonds of generative artificial intelligence by minimizing the maximum entropy. - Mattia Miotto; Lorenzo Monacelli (CoRR, 2025)