Locally Adaptive Statistical Procedures for the Integrative Analysis on Genomic and Transcriptional Data. - Mattia Zampieri; Ingrid Cifola; Dario Basso; Roberta Spinelli; Luca Beltrame; Clelia Peano; Cristina Battaglia; Silvio Bicciato (WILF, 2007)

Modeling the genome-wide transient response to stimuli in yeast: Adaptation through integral feedback. - Mattia Zampieri; Nicola Soranzo; Claudio Altafini (CDC, 2008)

Discerning static and causal interactions in genome-wide reverse engineering problems. - Mattia Zampieri; Nicola Soranzo; Claudio Altafini (Bioinform., 2008)

Prion kinetic replication models and strain-dependent stability (to denaturation). - Mattia Zampieri; Giuseppe Legname; Claudio Altafini (ECC, 2009)

mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle. - Nicola Soranzo; Mattia Zampieri; Lorenzo Farina; Claudio Altafini (BMC Syst. Biol., 2009)

Investigating the Conformational Stability of Prion Strains through a Kinetic Replication Model. - Mattia Zampieri; Giuseppe Legname; Claudio Altafini (PLoS Comput. Biol., 2009)

A system-level approach for deciphering the transcriptional response to prion infection. - Mattia Zampieri; Giuseppe Legname; Daniel Segrè; Claudio Altafini (Bioinform., 2011)

Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer. - Giuseppe Facchetti; Mattia Zampieri; Claudio Altafini (BMC Syst. Biol., 2012)

Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems. - Mattia Zampieri; Uwe Sauer (Bioinform., 2016)

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. - Emanuel J. V. Gonçalves; Zrinka Raguz Nakic; Mattia Zampieri; Omar Wagih; David Ochoa; Uwe Sauer; Pedro Beltrão; Julio Saez-Rodriguez (PLoS Comput. Biol., 2017)