CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. - Mattias Jakobsson; Noah A. Rosenberg (Bioinform., 2007)

ADZE: a rarefaction approach for counting alleles private to combinations of populations. - Zachary A. Szpiech; Mattias Jakobsson; Noah A. Rosenberg (Bioinform., 2008)

COMPASS: a program for generating serial samples under an infinite sites model. - Mattias Jakobsson (Bioinform., 2009)

HaploPOP: a software that improves population assignment by combining markers into haplotypes. - Nicolas Duforet-Frebourg; Lucie Gattepaille; Michael G. B. Blum; Mattias Jakobsson (BMC Bioinform., 2015)

Comparison of sequencing data processing pipelines and application to underrepresented African human populations. - Gwenna Breton; Anna C. V. Johansson; Per Sjödin; Carina M. Schlebusch; Mattias Jakobsson (BMC Bioinform., 2021)