Integrating Structural Features with Protein Language Models to Predict Protein-Ligand Binding Sites. - Matyás Brabec; David Hoksza (BIBM, 2024)

Tutoring LLM into a Better CUDA Optimizer. - Matyás Brabec; Jirí Klepl; Michal Töpfer; Martin Krulis (Euro-Par (2), 2025)

Slaying a Life: Optimizing GPU-accelerated Game of Life Stencil. - Matyás Brabec; Jirí Klepl; Martin Krulis (IPDPS (Workshops), 2025)