Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. - Joseph N. Paulson; Cho-Yi Chen; Camila Miranda Lopes-Ramos; Marieke L. Kuijjer; John Platig; Abhijeet R. Sonawane; Maud Fagny; Kimberly Glass; John Quackenbush (BMC Bioinform., 2017)

PUMA: PANDA Using MicroRNA Associations. - Marieke L. Kuijjer; Maud Fagny; Alessandro Marin; John Quackenbush; Kimberly Glass (Bioinform., 2020)