Detecting Localized Repeats in Genomic Sequences: A New Strategy and Its Application to Bacillus Subtilis and Arabidopsis Thaliana Sequences. - Maude Klaerr-Blanchard; Hélène Chiapello; Eivind Coward (Comput. Chem., 2000)

Local Decoding of Sequences and Alignment-Free Comparison. - Gilles Didier; Ivan Laprevotte; Maude Pupin; Alain Hénaut (J. Comput. Biol., 2006)

Comparing sequences without using alignments: application to HIV/SIV subtyping. - Gilles Didier; Laurent Debomy; Maude Pupin; Ming Zhang; Alexander Grossmann; Claudine Devauchelle; Ivan Laprevotte (BMC Bioinform., 2007)

NORINE: a database of nonribosomal peptides. - Ségolène Caboche; Maude Pupin; Valérie Leclère; Arnaud Fontaine; Philippe Jacques; Gregory Kucherov (Nucleic Acids Res., 2008)

A new fingerprint to predict nonribosomal peptides activity. - Ammar Abdo; Ségolène Caboche; Valérie Leclère; Philippe Jacques; Maude Pupin (J. Comput. Aided Mol. Des., 2012)

Modèles bio-informatiques pour les peptides non-ribosomiques et leurs synthétases. (Computational biology for nonribosomal peptides and their synthetases). - Maude Pupin (2013)

Prediction of New Bioactive Molecules using a Bayesian Belief Network. - Ammar Abdo; Valérie Leclère; Philippe Jacques; Naomie Salim; Maude Pupin (J. Chem. Inf. Model., 2014)

Smiles2Monomers: a link between chemical and biological structures for polymers. - Yoann Dufresne; Laurent Noé; Valérie Leclère; Maude Pupin (J. Cheminformatics, 2015)

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. - Areski Flissi; Yoann Dufresne; Juraj Michalik; Laurie Tonon; Stéphane Janot; Laurent Noé; Philippe Jacques; Valérie Leclère; Maude Pupin (Nucleic Acids Res., 2016)

rBAN: retro-biosynthetic analysis of nonribosomal peptides. - Emma Ricart; Valérie Leclère; Areski Flissi; Markus Müller 006; Maude Pupin; Frédérique Lisacek (J. Cheminformatics, 2019)

Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects. - Loïc Meunier; Pierre Tocquin; Luc Cornet; Damien Sirjacobs; Valérie Leclère; Maude Pupin; Philippe Jacques; Denis Baurain (Bioinform., 2020)

Monomer structure fingerprints: an extension of the monomer composition version for peptide databases. - Ammar Abdo; Eissa Ghaleb; Naser K. A. Alajmi; Maude Pupin (J. Comput. Aided Mol. Des., 2020)

Norine: update of the nonribosomal peptide resource. - Areski Flissi; Emma Ricart; Clémentine Campart; Mickael Chevalier; Yoann Dufresne; Juraj Michalik; Philippe Jacques; Christophe Flahaut; Frédérique Lisacek; Valérie Leclère; Maude Pupin (Nucleic Acids Res., 2020)

LINGO-DL: a text-based approach for molecular similarity searching. - Ammar Abdo; Maude Pupin (J. Comput. Aided Mol. Des., 2021)

Turbo prediction: a new approach for bioactivity prediction. - Ammar Abdo; Maude Pupin (J. Comput. Aided Mol. Des., 2022)