An algorithm for simultaneous comparison of several sequences. - Mauno Vihinen (Comput. Appl. Biosci., 1988)

MULTICOMP: a program package for multiple sequence comparison. - Mauno Vihinen; A. Euranto; Petri Luostarinen; Olli Nevalainen (Comput. Appl. Biosci., 1992)

BTKbase, mutation database for X-linked agammaglobulinemia (XLA). - Mauno Vihinen; Tsutomu Iwata; Christine Kinnon; Sau-Ping Kwan; Hans D. Ochs; Igor Vorechovsky; C. I. Edvard Smith (Nucleic Acids Res., 1996)

BTKbase, mutation database for X-linked agammaglobulinemia (XLA). - Mauno Vihinen; Oliver Brandau; Lars J. Brandén; Sau-Ping Kwan; Ilkka Lappalainen; Tracy Lester; Jeroen G. Noordzij; Hans D. Ochs; Juha Ollila; Sandy M. Pienaar; Pentti Riikonen; Bratin K. Saha; et al. (Nucleic Acids Res., 1998)

MUTbase: maintenance and analysis of distributed mutation databases. - Pentti Riikonen; Mauno Vihinen (Bioinform., 1999)

KinMutBase, a database of human disease-causing protein kinase mutations. - Kaj A. E. Stenberg; Pentti Riikonen; Mauno Vihinen (Nucleic Acids Res., 1999)

Binary Vector of Real Value Coding for Secondary Structure Prediction? A Case Study of Polyproline Type II Prediction. - Markku Siermala; Martti Juhola; Mauno Vihinen (ISMDA, 2001)

On Approximate String Matching of Unique Oligonucleotides. - Heikki Hyyrö; Mauno Vihinen; Martti Juhola (MedInfo, 2001)

BioWAP, mobile Internet service for bioinformatics. - Pentti Riikonen; Jorma Boberg; Tapio Salakoski; Mauno Vihinen (Bioinform., 2001)

On preprocessing of protein sequences for neural network prediction of polyproline type II secondary structures. - Markku Siermala; Martti Juhola; Mauno Vihinen (Comput. Biol. Medicine, 2001)

IDR: the ImmunoDeficiency Resource. - Jouni Väliaho; Marianne Pusa; Tuomo Ylinen; Mauno Vihinen (Nucleic Acids Res., 2002)

Mobile access to biological databases on the Internet. - Pentti Riikonen; Jorma Boberg; Tapio Salakoski; Mauno Vihinen (IEEE Trans. Biomed. Eng., 2002)

Signal transduction-related bioinformatics services. - Mauno Vihinen (Briefings Bioinform., 2003)

Efficient estimation of emission probabilities in profile hidden Markov models. - Virpi Ahola; Tero Aittokallio; Esa Uusipaikka; Mauno Vihinen (Bioinform., 2003)

RankViaContact: ranking and visualization of amino acid contacts. - Bairong Shen; Mauno Vihinen (Bioinform., 2003)

On Postprocessing of Neural Network Prediction of Polyproline Type II Secondary Structures: Network Spectrum, Response Analysis, and Scattering. - Markku Siermala; Martti Juhola; Mauno Vihinen (Neural Comput. Appl., 2003)

Fast Iterative Gene Clustering Based on Information Theoretic Criteria for Selecting the Cluster Structure. - Ciprian Doru Giurcaneanu; Ioan Tabus; Jaakko Astola; Juha Ollila; Mauno Vihinen (J. Comput. Biol., 2004)

Dynamic covariation between gene expression and proteome characteristics. - Mansour Taghavi Azar Sharabiani; Markku Siermala; Tommi O. Lehtinen; Mauno Vihinen (BMC Bioinform., 2005)

On exact string matching of unique oligonucleotides. - Heikki Hyyrö; Martti Juhola; Mauno Vihinen (Comput. Biol. Medicine, 2005)

Distribution of immunodeficiency fact files with XML - from Web to WAP. - Jouni Väliaho; Pentti Riikonen; Mauno Vihinen (BMC Medical Informatics Decis. Mak., 2005)

A statistical score for assessing the quality of multiple sequence alignments. - Virpi Ahola; Tero Aittokallio; Mauno Vihinen; Esa Uusipaikka (BMC Bioinform., 2006)

Evaluation of Protein Hydropathy Scales. - Satu Jääskeläinen; Pentti Riikonen; Tapio Salakoski; Mauno Vihinen (BIBM, 2007)

Model-based prediction of sequence alignment quality. - Virpi Ahola; Tero Aittokallio; Mauno Vihinen; Esa Uusipaikka (Bioinform., 2008)

PseudoGeneQuest - Service for identification of different pseudogene types in the human genome. - Csaba P. Ortutay; Mauno Vihinen (BMC Bioinform., 2008)

National research contributions: A case study on Finnish biomedical research. - Pentti Riikonen; Mauno Vihinen (Scientometrics, 2008)

Evaluation of Accuracy and Applicability of Protein Models: Retrospective Analysis of Biological and Biomedical Predictions. - Sofia Khan; Mauno Vihinen (Silico Biol., 2009)

Accuracy of protein hydropathy predictions. - Satu Jääskeläinen; Pentti Riikonen; Tapio Salakoski; Mauno Vihinen (Int. J. Data Min. Bioinform., 2010)

VarioML framework for comprehensive variation data representation and exchange. - Myles Byrne; Ivo F. A. C. Fokkema; Owen Lancaster; Tomasz Adamusiak; Anni Ahonen-Bishopp; David Atlan; Christophe Béroud; Michael Cornell; Raymond Dalgleish; Andrew Devereau; George P. Patrinos; Morris A. Swertz; et al. (BMC Bioinform., 2012)

Variation ontology: annotator guide. - Mauno Vihinen (J. Biomed. Semant., 2014)

Identification of core T cell network based on immunome interactome. - Gabriel N. Teku; Csaba P. Ortutay; Mauno Vihinen (BMC Syst. Biol., 2014)

Standard development at the Human Variome Project. - Timothy D. Smith; Mauno Vihinen (Database J. Biol. Databases Curation, 2015)

No more hidden solutions in bioinformatics. - Mauno Vihinen (Nat., 2015)

PON-Sol: prediction of effects of amino acid substitutions on protein solubility. - Yang Yang; Abhishek Niroula; Bairong Shen; Mauno Vihinen (Bioinform., 2016)

PON-SC - program for identifying steric clashes caused by amino acid substitutions. - Jelena Calyseva; Mauno Vihinen (BMC Bioinform., 2017)

Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies. - Emmanouil Viennas; Angeliki Komianou; Clint Mizzi; Maja Stojiljkovic; Christina Mitropoulou; Juha Muilu; Mauno Vihinen; Panagiota Grypioti; Styliani Papadaki; Cristiana Pavlidis; Branka Zukic; Theodora Katsila; et al. (Nucleic Acids Res., 2017)

NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database. - Yang Yang; Chen Xu; Xingyun Liu; Chao Xu; Yuanyuan Zhang; Li Shen; Mauno Vihinen; Bairong Shen (Database J. Biol. Databases Curation, 2018)

Representativeness of variation benchmark datasets. - Gerard C. P. Schaafsma; Mauno Vihinen (BMC Bioinform., 2018)

How good are pathogenicity predictors in detecting benign variants? - Abhishek Niroula; Mauno Vihinen (PLoS Comput. Biol., 2019)

Variation benchmark datasets: update, criteria, quality and applications. - Anasua Sarkar; Yang Yang; Mauno Vihinen (Database J. Biol. Databases Curation, 2020)

VariBench, new variation benchmark categories and data sets. - Niloofar Shirvanizadeh; Mauno Vihinen (Frontiers Bioinform., 2023)