Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. - Maureen A. Sartor; Craig R. Tomlinson; Scott C. Wesselkamper; Siva Sivaganesan; George D. Leikauf; Mario Medvedovic (BMC Bioinform., 2006)

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data. - Maureen A. Sartor; George D. Leikauf; Mario Medvedovic (Bioinform., 2009)

ConceptGen: a gene set enrichment and gene set relation mapping tool. - Maureen A. Sartor; Vasudeva Mahavisno; Venkateshwar G. Keshamouni; James D. Cavalcoli; Zach Wright; Alla Karnovsky; Rork Kuick; H. V. Jagadish; Barbara Mirel; Terry E. Weymouth; Brian D. Athey; Gilbert S. Omenn (Bioinform., 2010)

A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. - Richard C. McEachin; Haiming Chen; Maureen A. Sartor; Scott F. Saccone; Benjamin J. Keller; Alan R. Prossin; James D. Cavalcoli; Melvin G. McInnis (BMC Syst. Biol., 2010)

Appearance frequency modulated gene set enrichment testing. - Jun Ma; Maureen A. Sartor; H. V. Jagadish (BMC Bioinform., 2011)

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. - Alla Karnovsky; Terry E. Weymouth; Tim Hull; V. Glenn Tarcea; Giovanni Scardoni; Carlo Laudanna; Maureen A. Sartor; Kathleen A. Stringer; H. V. Jagadish; Charles F. Burant; Brian D. Athey; Gilbert S. Omenn (Bioinform., 2012)

Metab2MeSH: annotating compounds with medical subject headings. - Maureen A. Sartor; Alexander S. Ade; Zach Wright; David J. States; Gilbert S. Omenn; Brian D. Athey; Alla Karnovsky (Bioinform., 2012)

THINK Back: KNowledge-based Interpretation of High Throughput data. - Fernando Farfán; Jun Ma; Maureen A. Sartor; George Michailidis; H. V. Jagadish (BMC Bioinform., 2012)

Convergence of genetic influences in comorbidity. - Richard C. McEachin; Keerthi S. Sannareddy; James D. Cavalcoli; Alla Karnovsky; Jacqueline M. Vink; Maureen A. Sartor (BMC Bioinform., 2012)

Broad-Enrich: functional interpretation of large sets of broad genomic regions. - Raymond G. Cavalcante; Chee Lee; Ryan P. Welch; Snehal Patil; Terry E. Weymouth; Laura J. Scott; Maureen A. Sartor (Bioinform., 2014)

MethylSig: a whole genome DNA methylation analysis pipeline. - Yongseok Park; Maria E. Figueroa; Laura S. Rozek; Maureen A. Sartor (Bioinform., 2014)

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data. - Yan-Xiao Zhang; Yu-Hsuan Lin; Timothy D. Johnson; Laura S. Rozek; Maureen A. Sartor (Bioinform., 2014)

ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts. - Raymond G. Cavalcante; Snehal Patil; Terry E. Weymouth; Kestutis G. Bendinskas; Alla Karnovsky; Maureen A. Sartor (Bioinform., 2016)

RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power. - Chee Lee; Snehal Patil; Maureen A. Sartor (Bioinform., 2016)

annotatr: genomic regions in context. - Raymond G. Cavalcante; Maureen A. Sartor (Bioinform., 2017)

Universal concept signature analysis: genome-wide quantification of new biological and pathological functions of genes and pathways. - Xu Chi; Maureen A. Sartor; Sanghoon Lee; Meenakshi Anurag; Snehal Patil; Pelle Hall; Matthew Wexler; Xiao-Song Wang 004 (Briefings Bioinform., 2020)

Coupled matrix-matrix and coupled tensor-matrix completion methods for predicting drug-target interactions. - Maryam Bagherian; Renaid B. Kim; Cheng Jiang 003; Maureen A. Sartor; Harm Derksen; Kayvan Najarian (Briefings Bioinform., 2021)

Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. - Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A. Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian (Briefings Bioinform., 2021)

Erratum to: Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. - Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A. Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian (Briefings Bioinform., 2021)

piOxi database: a web resource of germline and somatic tissue piRNAs identified by chemical oxidation. - Kai Wang; Bambarendage P. U. Perera; Rachel K. Morgan; Kimberley Sala-Hamrick; Viviana Geron; Laurie K. Svoboda; Christopher Faulk; Dana C. Dolinoy; Maureen A. Sartor (Database J. Biol. Databases Curation, 2024)