VIPERdb2: an enhanced and web API enabled relational database for structural virology. - Mauricio Carrillo-Tripp; Craig M. Shepherd; Ian A. Borelli; Sangita Venkataraman; Gabriel Lander; Padmaja Natarajan; John E. Johnson; Charles L. Brooks III; Vijay S. Reddy (Nucleic Acids Res., 2009)

Linear Complexity and High Scalability of a Parallel Monte Carlo Simulation Method. - Guillermo Amaro-Rico; Salvador Botello Rionda; Mauricio Carrillo-Tripp (3PGCIC, 2013)

HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data. - Mauricio Carrillo-Tripp; Leonardo Alvarez-Rivera; Omar Israel Lara-Ramírez; Francisco Javier Becerra-Toledo; Adan Vega-Ramírez; Emmanuel Quijas-Valades; Eduardo González-Zavala; Julio Cesar González-Vázquez; Javier García-Vieyra; Nelly Beatriz Santoyo-Rivera; Sergio Víctor Chapa Vergara; Amilcar Meneses Viveros (J. Comput. Aided Mol. Des., 2018)

Parallel High-Performance Computing Algorithm to Generate FEM-Compliant Volumetric Mesh Representations of Biomolecules at Atomic Scale. - Jorge López; Salvador Botello; Rafael Herrera; Mauricio Carrillo-Tripp (ISUM, 2019)

VIPERdb v3.0: a structure-based data analytics platform for viral capsids. - Daniel Montiel-Garcia; Nelly Beatriz Santoyo-Rivera; Phuong Ho; Mauricio Carrillo-Tripp; Charles L. Brooks III; John E. Johnson; Vijay S. Reddy (Nucleic Acids Res., 2021)

Viral capsid nanoindentation simulations using octree-type data structures. - Jorge López-Ruiz; Salvador Botello Rionda; Rafael Herrera Guzmán; Mauricio Carrillo-Tripp (Math. Comput. Simul., 2023)

Programming a Web Interface for Protein-Ligand Docking. - Aldo Hiram Tovar-Domínguez; Adrián Arturo Ayala-Sánchez; Mauricio Carrillo-Tripp; José Marcos Falcón-González (Res. Comput. Sci., 2024)

Mycobacterium susceptibility to ivermectin by inhibition of eccD3, an ESX-3 secretion system component. - Ana Laura Granados-Tristán; Mauricio Carrillo-Tripp; Carlos Eduardo Hernández-Luna; Aldo Herrera-Rodulfo; Laura Adiene González-Escalante; Ana Leticia Arriaga-Guerrero; Beatriz Silva-Ramírez; Brenda Leticia Escobedo-Guajardo; Roberto Mercado-Hernández; Mario Bermúdez de León; Katia Peñuelas-Urquides (PLoS Comput. Biol., 2025)