MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein. - Maurício Menegatti Rigo; Dinler Amaral Antunes; Gustavo Fioravanti Vieira; José Artur Bogo Chies (BSB, 2009)

Reconstruction of MHC Alleles by Cross Modeling and Structural Assessment. - Cassiana Chassot Fulber; Dinler Amaral Antunes; Maurício Menegatti Rigo; José Artur Bogo Chies; Marialva Sinigaglia; Gustavo Fioravanti Vieira (BIOCOMP, 2010)

CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes. - Marialva Sinigaglia; Dinler Amaral Antunes; Maurício Menegatti Rigo; José Artur Bogo Chies; Gustavo Fioravanti Vieira (Database J. Biol. Databases Curation, 2013)

ChaperISM: improved chaperone binding prediction using position-independent scoring matrices. - M. B. B. Gutierres; C. B. C. Bonorino; Maurício Menegatti Rigo (Bioinform., 2020)

DINC-COVID: A webserver for ensemble docking with flexible SARS-CoV-2 proteins. - Sarah Hall-Swan; Didier Devaurs; Maurício Menegatti Rigo; Dinler A. Antunes; Lydia E. Kavraki; Geancarlo Zanatta (Comput. Biol. Medicine, 2021)

EnGens: a computational framework for generation and analysis of representative protein conformational ensembles. - Anja Conev; Maurício Menegatti Rigo; Didier Devaurs; André Faustino Fonseca; Hussain Kalavadwala; Martiela Vaz de Freitas; Cecilia Clementi; Geancarlo Zanatta; Dinler Amaral Antunes; Lydia E. Kavraki (Briefings Bioinform., 2023)

APE-Gen2.0: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries. - Romanos Fasoulis; Maurício Menegatti Rigo; Gregory Lizée; Dinler A. Antunes; Lydia E. Kavraki (J. Chem. Inf. Model., 2024)