Explaining disease using big data: How valid is your pathway? - Bas Stringer; Maurits J. J. Dijkstra; K. Anton Feenstra; Sanne Abeln; Jaap Heringa (HPCS, 2015)

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. - Predrag Kukic; Arvind Kannan; Maurits J. J. Dijkstra; Sanne Abeln; Carlo Camilloni; Michele Vendruscolo (PLoS Comput. Biol., 2015)

Motif-Aware PRALINE: Improving the alignment of motif regions. - Maurits J. J. Dijkstra; Punto Bawono; Sanne Abeln; K. Anton Feenstra; Wan J. Fokkink; Jaap Heringa (PLoS Comput. Biol., 2018)

Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit. - Maurits J. J. Dijkstra; Atze van der Ploeg; K. Anton Feenstra; Wan J. Fokkink; Sanne Abeln; Jaap Heringa (Bioinform., 2019)