Computer-assisted perception of similarity using the Chiron program: a powerful tool for the analysis and prediction of biogenetic patterns. - Stephen Hanessian; Maurizio Botta; Benoit Larouche; Ani Boyaroglu (J. Chem. Inf. Comput. Sci., 1992)

Research on anti-HIV-1 agents. Investigation on the CD4-Suradista binding mode through docking experiments. - Fabrizio Manetti; Federico Corelli; Nicola Mongelli; Andrea Lombardi Borgia; Maurizio Botta (J. Comput. Aided Mol. Des., 2000)

Variable selection and specification of robust QSAR models from multicollinear data: arylpiperazinyl derivatives with affinity and selectivity for α2-adrenoceptors. - David W. Salt; Laura Maccari; Maurizio Botta; Martyn G. Ford (J. Comput. Aided Mol. Des., 2004)

A Genetic-Function-Approximation-Based QSAR Model for the Affinity of Arylpiperazines toward alpha1 Adrenoceptors. - Laura Maccari; Matteo Magnani; Giovannella Strappaghetti; Federico Corelli; Maurizio Botta; Fabrizio Manetti (J. Chem. Inf. Model., 2006)

A Combination of Molecular Dynamics and Docking Calculations to Explore the Binding Mode of ADS-J1, a Polyanionic Compound Endowed with Anti-HIV-1 Activity. - Fabrizio Manetti; Cristina Tintori; Mercedes Armand-Ugón; Imma Clotet-Codina; Silvio Massa; Rino Ragno; José A. Esté; Maurizio Botta (J. Chem. Inf. Model., 2006)

Lennard-Jones Potential and Dummy Atom Settings to Overcome the AUTODOCK Limitation in Treating Flexible Ring Systems. - Stefano Forli; Maurizio Botta (J. Chem. Inf. Model., 2007)

Novel Virtual Screening Protocol Based on the Combined Use of Molecular Modeling and Electron-Ion Interaction Potential Techniques To Design HIV-1 Integrase Inhibitors. - Cristina Tintori; Fabrizio Manetti; Nevena Veljkovic; Vladimir Perovic; Jo Vercammen; Sean Hayes; Silvio Massa; Myriam Witvrouw; Zeger Debyser; Veljko Veljkovic; Maurizio Botta (J. Chem. Inf. Model., 2007)

Construction and Validation of a RET TK Catalytic Domain by Homology Modeling. - Tiziano Tuccinardi; Fabrizio Manetti; Silvia Schenone; Adriano Martinelli; Maurizio Botta (J. Chem. Inf. Model., 2007)

Targets Looking for Drugs: A Multistep Computational Protocol for the Development of Structure-Based Pharmacophores and Their Applications for Hit Discovery. - Cristina Tintori; Valentina Corradi; Matteo Magnani; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2008)

Molecular Dynamics and DFT Study on HIV-1 Nucleocapsid Protein-7 in Complex with Viral Genome. - Mattia Mori; Ursula Dietrich; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2010)

Protein Kinases: Docking and Homology Modeling Reliability. - Tiziano Tuccinardi; Maurizio Botta; Antonio Giordano; Adriano Martinelli (J. Chem. Inf. Model., 2010)

Predicting the Binding Mode of Known NCp7 Inhibitors To Facilitate the Design of Novel Modulators. - Mattia Mori; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2011)

Unconventional Plasticity of HIV-1 Reverse Transcriptase: How Inhibitors Could Open a Connection "Gate" between Allosteric and Catalytic Sites. - Luca Bellucci; Lucilla Angeli; Andrea Tafi; Marco Radi; Maurizio Botta (J. Chem. Inf. Model., 2013)

Insight into the Allosteric Inhibition of Abl Kinase. - Anna Lucia Fallacara; Cristina Tintori; Marco Radi; Silvia Schenone; Maurizio Botta (J. Chem. Inf. Model., 2014)

Molecular Dynamics Simulations and Structural Analysis of Giardia duodenalis 14-3-3 Protein-Protein Interactions. - Ylenia Cau; Annarita Fiorillo; Mattia Mori; Andrea Ilari; Maurizio Botta; Marco Lalle (J. Chem. Inf. Model., 2015)

Homology Model-Based Virtual Screening for the Identification of Human Helicase DDX3 Inhibitors. - Roberta Fazi; Cristina Tintori; Annalaura Brai; Lorenzo Botta; Manikandan Selvaraj; Anna Garbelli; Giovanni Maga; Maurizio Botta (J. Chem. Inf. Model., 2015)