CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species. - Maurizio Pellegrino; Paolo Provero; Lorenzo Silengo; Ferdinando Di Cunto (BMC Bioinform., 2004)

Harshlight: a "corrective make-up" program for microarray chips. - Mayte Suárez-Fariñas; Maurizio Pellegrino; Knut M. Wittkowski; Marcelo O. Magnasco (BMC Bioinform., 2005)

Detecting artifacts on SNP chips. - Maurizio Pellegrino; Mayte Suárez-Fariñas; Marcelo O. Magnasco; Knut M. Wittkowski (EMBC, 2006)

Bioinformatics Tools Enabling U-Statistics for Microarrays. - Knut M. Wittkowski; Asifa Haider; Ephraim Sehayek; Mayte Suárez-Fariñas; Maurizio Pellegrino; Alexandre Peshansky; Cameron Coffran; Sanford Coker (EMBC, 2006)