An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. - Mauro Delorenzi; Terence P. Speed (Bioinform., 2002)

The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. - Christoph D. Schmid; Viviane Praz; Mauro Delorenzi; Rouaïda Périer; Philipp Bucher (Nucleic Acids Res., 2004)

HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites. - Vidhya Jagannathan; Emmanuelle Roulet; Mauro Delorenzi; Philipp Bucher (Nucleic Acids Res., 2006)

MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data. - Christoph D. Schmid; Thierry Sengstag; Philipp Bucher; Mauro Delorenzi (Nucleic Acids Res., 2007)

MAMOT: hidden Markov modeling tool. - Frédéric Schütz; Mauro Delorenzi (Bioinform., 2008)

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'. - Alexandre Kuhn; Ruth Luthi-Carter; Mauro Delorenzi (BMC Bioinform., 2008)

Computational Intelligence in Clinical Oncology: Lessons Learned from an Analysis of a Clinical Study. - Benjamin Haibe-Kains; Christine Desmedt; Sherene Loi; Mauro Delorenzi; Christos P. Sotiriou; Gianluca Bontempi (Computational Intelligence in Biomedicine and Bioinformatics, 2008)

Selecting control genes for RT-QPCR using public microarray data. - Vlad Popovici; Darlene R. Goldstein; Janine Antonov; Rolf Jaggi; Mauro Delorenzi; Pratyaksha Wirapati (BMC Bioinform., 2009)

Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets. - Fabrice Berger; Bertrand De Meulder; Anthoula Gaigneaux; Sophie Depiereux; Eric Bareke; Michael Pierre; Benoît De Hertogh; Mauro Delorenzi; Eric Depiereux (BMC Bioinform., 2010)

Towards an environment for data mining based analysis processes in bioinformatics & personalized medicine. - Dennis Wegener; Simona Rossi; Francesca Buffa; Mauro Delorenzi; Stefan Riiping (BIBM Workshops, 2011)

Rgtsp: a generalized top scoring pairs package for class prediction. - Vlad Popovici; Eva Budinska; Mauro Delorenzi (Bioinform., 2011)

A comparison of methods for differential expression analysis of RNA-seq data. - Charlotte Soneson; Mauro Delorenzi (BMC Bioinform., 2013)

Towards an environment for data mining based analysis processes in bioinformatics and personalized medicine. - Dennis Wegener; Simona Rossi; Francesca Buffa; Mauro Delorenzi; Stefan Rüping 001 (Netw. Model. Anal. Health Informatics Bioinform., 2013)

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. - Heinz Stockinger; Adrian M. Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic B. Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; et al. (Nucleic Acids Res., 2014)

Context-based retrieval of functional modules in protein-protein interaction networks. - Maria Pamela Dobay; Silke Stertz; Mauro Delorenzi (Briefings Bioinform., 2018)