Classification of DNA sequences using Bloom filters. - Henrik Stranneheim; Max Käller; Tobias Allander; Björn Andersson; Lars Arvestad; Joakim Lundeberg (Bioinform., 2010)

MultiQC: summarize analysis results for multiple tools and samples in a single report. - Philip Ewels; Måns Magnusson; Sverker Lundin; Max Käller (Bioinform., 2016)

Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2. - Nicola Prezza; Francesco Vezzi; Max Käller; Alberto Policriti (BMC Bioinform., 2016)

Cluster Flow: A user-friendly bioinformatics workflow tool. - Philip Ewels; Felix Krueger; Max Käller; Simon R. Andrews (F1000Research, 2016)

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants. - Maxime Garcia; Szilveszter Juhos; Malin Larsson; Páll Ísólfur Ólason; Marcel Martin; Jesper Eisfeldt; Sebastian DiLorenzo; Johanna Sandgren; Teresita Diaz de Ståhl; Philip Ewels; Valtteri Wirta; Monica Nistér; et al. (F1000Research, 2020)