Short clones or long clones? A simulation study on the use of paired reads in metagenomics. - Suparna Mitra; Max Schubach; Daniel H. Huson (BMC Bioinform., 2010)

Ensembling Descendant Term Classifiers to Improve Gene - Abnormal Phenotype Predictions. - Marco Notaro; Max Schubach; Marco Frasca 001; Marco Mesiti; Peter N. Robinson; Giorgio Valentini (CIBB, 2017)

Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods. - Marco Notaro; Max Schubach; Peter N. Robinson; Giorgio Valentini (BMC Bioinform., 2017)

Learning the Non-Coding Genome. - Max Schubach (2018)

Bayesian Optimization Improves Tissue-Specific Prediction of Active Regulatory Regions with Deep Neural Networks. - Luca Cappelletti; Alessandro Petrini; Jessica Gliozzo; Elena Casiraghi; Max Schubach; Martin Kircher; Giorgio Valentini (IWBBIO, 2020)

Boosting tissue-specific prediction of active cis-regulatory regions through deep learning and Bayesian optimization techniques. - Luca Cappelletti; Alessandro Petrini; Jessica Gliozzo; Elena Casiraghi; Max Schubach; Martin Kircher; Giorgio Valentini (BMC Bioinform., 2022)

Using individual barcodes to increase quantification power of massively parallel reporter assays. - Pia Keukeleire; Jonathan D. Rosen; Angelina Göbel-Knapp; Kilian Salomon; Max Schubach; Martin Kircher (BMC Bioinform., 2025)