RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps. - Matan Drory Retwitzer; Maya Polishchuk; Elena Churkin; Ilona Kifer; Zohar Yakhini; Danny Barash (Nucleic Acids Res., 2015)

SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data. - Maya Polishchuk; Inbal Paz; Zohar Yakhini; Yael Mandel-Gutfreund (Nucleic Acids Res., 2018)