CHOYCE: a web server for constrained homology modelling with cryoEM maps. - Reda Rawi; Lee Whitmore; Maya Topf (Bioinform., 2010)

A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps. - Shi-Hua Zhang; Daven Vasishtan; Min Xu; Maya Topf; Frank Alber (Bioinform., 2010)

RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps. - Arun Prasad Pandurangan; Maya Topf (Bioinform., 2012)

Jwalk and MNXL web server: model validation using restraints from crosslinking mass spectrometry. - Joshua M. A Bullock; Konstantinos Thalassinos; Maya Topf (Bioinform., 2018)

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps. - Agnel Praveen Joseph; Ingvar C. Lagerstedt; Arjen Jakobi; Tom Burnley; Ardan Patwardhan; Maya Topf; Martyn Winn (J. Chem. Inf. Model., 2020)

PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraX. - Luca R. Genz; Thomas Mulvaney; Sanjana Nair; Maya Topf (Bioinform., 2023)