Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. - Mayumi Nakano; Kan Nobuta; Kalyan Vemaraju; Shivakundan Singh Tej; Jeremy W. Skogen; Blake C. Meyers (Nucleic Acids Res., 2006)

miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis. - Parth Patel; S. Deepthi Ramachandruni; Atul Kakrana; Mayumi Nakano; Blake C. Meyers (Bioinform., 2016)

Optimization Performance of Factorization Machine with Annealing under Limited Training Data. - Mayumi Nakano; Yuya Seki; Shuta Kikuchi; Shu Tanaka (CoRR, 2025)