BiologicalNetworks: visualization and analysis tool for systems biology. - Michael Baitaluk; Mayya Sedova; Animesh Ray; Amarnath Gupta (Nucleic Acids Res., 2006)

CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. - Ilkay Altintas; Abel W. Lin; Jing Chen; Chris Churas; Madhusudan Gujral; Shulei Sun; Weizhong Li 002; Ramil Manansala; Mayya Sedova; Jeffrey S. Grethe; Mark H. Ellisman (SERVICES, 2010)

BiologicalNetworks 2.0 - an integrative view of genome biology data. - Sergey Kozhenkov; Yulia Dubinina; Mayya Sedova; Amarnath Gupta; Julia V. Ponomarenko; Michael Baitaluk (BMC Bioinform., 2010)

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies. - Sergey Kozhenkov; Mayya Sedova; Yulia Dubinina; Amarnath Gupta; Animesh Ray; Julia V. Ponomarenko; Michael Baitaluk (BMC Syst. Biol., 2011)

LUD, a new protein domain associated with lactate utilization. - William C. Hwang; Constantina Bakolitsa; Marco Punta; Penelope Coggill; Alex Bateman; Herbert L. Axelrod; Neil D. Rawlings; Mayya Sedova; Scott N. Peterson; Ruth Y. Eberhardt; L. Aravind; Jaime Pascual; et al. (BMC Bioinform., 2013)

PubServer: literature searches by homology. - Lukasz Jaroszewski; Laszlo Koska; Mayya Sedova; Adam Godzik (Nucleic Acids Res., 2014)

Protael: protein data visualization library for the web. - Mayya Sedova; Lukasz Jaroszewski; Adam Godzik (Bioinform., 2016)

PDBFlex: exploring flexibility in protein structures. - Thomas Hrabe; Zhanwen Li; Mayya Sedova; Piotr Rotkiewicz; Lukasz Jaroszewski; Adam Godzik (Nucleic Acids Res., 2016)

Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets. - Mayya Sedova; Mallika Iyer; Zhanwen Li; Lukasz Jaroszewski; Kai W. Post; Thomas Hrabe; Eduard Porta-Pardo; Adam Godzik (Nucleic Acids Res., 2019)

Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence. - Mayya Sedova; Lukasz Jaroszewski; Arghavan Alisoltani; Adam Godzik (Bioinform., 2020)

FATCAT 2.0: towards a better understanding of the structural diversity of proteins. - Zhanwen Li; Lukasz Jaroszewski; Mallika Iyer; Mayya Sedova; Adam Godzik (Nucleic Acids Res., 2020)

The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins. - Lukasz Jaroszewski; Mallika Iyer; Arghavan Alisoltani; Mayya Sedova; Adam Godzik (PLoS Comput. Biol., 2021)