Upward Planar Drawings of Series-Parallel Digraphs with Maximum Degree Three. - Md. Abul Hassan Samee; Md. Saidur Rahman 001 (WALCOM, 2007)

Minimum Segment Drawings of Series-Parallel Graphs with the Maximum Degree Three. - Md. Abul Hassan Samee; Md. Jawaherul Alam; Muhammad Abdullah Adnan; Md. Saidur Rahman 001 (GD, 2008)

Upward Drawings of Trees on the Minimum Number of Layers. - Md. Jawaherul Alam; Md. Abul Hassan Samee; Mashfiqui Rabbi; Md. Saidur Rahman 001 (WALCOM, 2008)

Computing beta -Drawings of 2-Outerplane Graphs in Linear Time. - Md. Abul Hassan Samee; Mohammad Tanvir Irfan; Md. Saidur Rahman 001 (WALCOM, 2008)

Minimum-Layer Upward Drawings of Trees. - Muhammad Jawaherul Alam; Md. Abul Hassan Samee; Mashfiqui Rabbi; Md. Saidur Rahman 001 (J. Graph Algorithms Appl., 2010)

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression. - Xin He 001; Md. Abul Hassan Samee; Charles Blatti; Saurabh Sinha (PLoS Comput. Biol., 2010)

Quantitative Modeling of a Gene's Expression from Its Intergenic Sequence. - Md. Abul Hassan Samee; Saurabh Sinha (PLoS Comput. Biol., 2014)

Computational modeling of gene expression from regulatory sequences - Md. Abul Hassan Samee (2015)

ScribbleDom: using scribble-annotated histology images to identify domains in spatial transcriptomics data. - Mohammad Nuwaisir Rahman; Abdullah Al Noman; Abir Mohammad Turza; Mohammed Abid Abrar; Md. Abul Hassan Samee; M. Saifur Rahman (Bioinform., 2023)

CRISPR-DIPOFF: an interpretable deep learning approach for CRISPR Cas-9 off-target prediction. - Md. Toufikuzzaman; Md. Abul Hassan Samee; M. Sohel Rahman (Briefings Bioinform., 2024)