DNAjig: A New Approach for Building DNA Nanostructures. - Md. Muksitul Haque; Ananth Kalyanaraman; Amit Dhingra; Nehal Abu-Lail; Kaori Graybeal (BIBM, 2009)

Generalized Query-Based Active Learning to Identify Differentially Methylated Regions in DNA. - Md. Muksitul Haque; Lawrence B. Holder; Michael K. Skinner; Diane J. Cook (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Imbalanced Class Learning in Epigenetics. - Md. Muksitul Haque; Michael K. Skinner; Lawrence B. Holder (J. Comput. Biol., 2014)