Speeding Up Bayesian HMM by the Four Russians Method. - Md Pavel Mahmud; Alexander Schliep (WABI, 2011)

Fast MCMC Sampling for Hidden Markov Models to Determine Copy Number Variations. - Md Pavel Mahmud; Alexander Schliep (BMC Bioinform., 2011)

Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees. - Md Pavel Mahmud; John Wiedenhoeft; Alexander Schliep (Bioinform., 2012)

TreQ-CG: Clustering Accelerates High-Throughput Sequencing Read Mapping. - Md Pavel Mahmud; Alexander Schliep (CoRR, 2014)