Generalized Boolean Hierarchies and Boolean Hierarchies Over RP (Conference Abstract). - Alberto Bertoni; Danilo Bruschi; Deborah Joseph; Meera Sitharam; Paul Young (FCT, 1989)

Kolmogorov Complexity, Restrited Nondeterminism and Generalized Spectra. - Deborah Joseph; Meera Sitharam (STACS, 1990)

Pseudorandom generators and learning algorithms for AC. - Meera Sitharam (STOC, 1994)

Evaluating Spectral Norms for Constant Depth Circuits with Symmetric Gates. - Meera Sitharam (Comput. Complex., 1995)

Pseudorandom Generators and Learning Algorithms for AC^0. - Meera Sitharam (Comput. Complex., 1995)

Approximation from linear spaces and applications to complexity - Meera Sitharam (Electron. Colloquium Comput. Complex., 1996)

Stable basis families and complexity lower bounds - Per Enflo; Meera Sitharam (Electron. Colloquium Comput. Complex., 1996)

Deranomized Learning of Boolean Functions. - Meera Sitharam; Timothy Straney (ALT, 1997)

Finding Solvable Subsets of Constraint Graphs. - Christoph M. Hoffmann; Andrew Lomonosov; Meera Sitharam (CP, 1997)

Non-constant Degree Lower Bounds imply linear Degree Lower Bounds - Søren Riis; Meera Sitharam (Electron. Colloquium Comput. Complex., 1997)

Quality of service provision in noncooperative networks: heterogenous preferences, multi-dimensional QoS vectors, and burstiness. - Kihong Park; Meera Sitharam; Shaogang Chen (ICE, 1998)

Planning Geometric Constraint Decomposition via Optimal Graph Transformations. - Christoph M. Hoffmann; Andrew Lomonosov; Meera Sitharam (AGTIVE, 1999)

Sampling Boolean Functions over Abelian Groups and Applications. - Meera Sitharam; Timothy Straney (Appl. Algebra Eng. Commun. Comput., 2000)

Quality of service provision in noncooperative networks with diverse user requirements. - Kihong Park; Meera Sitharam; Shaogang Chen (Decis. Support Syst., 2000)

Generating hard tautologies using predicate logic and the symmetric group. - Søren Riis; Meera Sitharam (Log. J. IGPL, 2000)

FRONTIER: fully enabling geometric constraints for feature-based modeling and assembly. - Jianjun Oung; Meera Sitharam; Brandon Moro; Adam Arbree (Symposium on Solid Modeling and Applications, 2001)

Derandomized Learning of Boolean Functions over Finite Abelian Groups. - Meera Sitharam; Timothy Straney (Int. J. Found. Comput. Sci., 2001)

Decomposition Plans for Geometric Constraint Systems, Part I: Performance Measures for CAD. - Christoph M. Hoffmann; Andrew Lomonosov; Meera Sitharam (J. Symb. Comput., 2001)

Decomposition Plans for Geometric Constraint Problems, Part II: New Algorithms. - Christoph M. Hoffmann; Andrew Lomonosov; Meera Sitharam (J. Symb. Comput., 2001)

When Theory Meets Practice: Enriching the CS Curriculum through Industrial Case Studies. - Joan Krone; David W. Juedes; Meera Sitharam (CSEE&T, 2002)

Combinatorial Approaches to Geometric Constraint Solving: Problems, Progress, and Directions. - Meera Sitharam (Geometric and Algorithmic Aspects of Computer-Aided Design and Manufacturing, 2003)

Stability vs. Optimality Tradeoff in Game Theoretic Mechanisms for QoS Provision. - Andrew Lomonosov; Meera Sitharam; Kihong Park (SAC, 2003)

Making constraint solvers more usable: overconstraint problem. - Christoph M. Hoffmann; Meera Sitharam; Bo Yuan (Comput. Aided Des., 2004)

Network QoS games: stability vs optimality tradeoff. - Andrew Lomonosov; Meera Sitharam; Kihong Park (J. Comput. Syst. Sci., 2004)

Counting and Enumeration of Self-assembly pathways for Symmetric macromolecular Structures. - Meera Sitharam; Miklós Bóna (Advances in Bioinformatics and Its Applications, 2005)

Elimination in generically rigid 3D geometric constraint systems. - Jörg Peters 001; Meera Sitharam; Yong Zhou 002; Jianhua Fan (Algebraic Geometry and Geometric Modeling, 2006)

Geometric constraints within feature hierarchies. - Meera Sitharam; Jianjun Oung; Yong Zhou 002; Adam Arbree (Comput. Aided Des., 2006)

Well-formed Systems of Point Incidences for Resolving Collections of Rigid Bodies. - Meera Sitharam (Int. J. Comput. Geom. Appl., 2006)

Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition. - Meera Sitharam; Mavis Agbandje-McKenna (J. Comput. Biol., 2006)

Solution space navigation for geometric constraint systems. - Meera Sitharam; Adam Arbree; Yong Zhou 002; Naganandhini Kohareswaran (ACM Trans. Graph., 2006)

Mutually unbiased bases and orthogonal decompositions of Lie algebras. - P. Oscar Boykin; Meera Sitharam; Pham Huu Tiep; Pawel Wocjan (Quantum Inf. Comput., 2007)

Stability, Optimality and Complexity of Network Games with Pricing and Player Dropouts. - Andrew Lomonosov; Meera Sitharam (Scalable Comput. Pract. Exp., 2007)

Characterizing graphs with convex and connected configuration spaces - Meera Sitharam; Heping Gao (CoRR, 2008)

Nucleation-free 3D rigidity. - Jialong Cheng; Meera Sitharam; Ileana Streinu (CCCG, 2009)

Characterizing 1-dof Henneberg-I graphs with efficient configuration spaces. - Heping Gao; Meera Sitharam (SAC, 2009)

Maxwell-independence: a better rank estimate for 3D rigidity matroids - Jialong Cheng; Meera Sitharam (CoRR, 2010)

Characterizing Graphs with Convex and Connected Cayley Configuration Spaces. - Meera Sitharam; Heping Gao (Discret. Comput. Geom., 2010)

Reconciling Conflicting Combinatorial Preprocessors for Geometric Constraint Systems. - Meera Sitharam; Yong Zhou 002; Jörg Peters 001 (Int. J. Comput. Geom. Appl., 2010)

Optimized parametrization of systems of incidences between rigid bodies. - Meera Sitharam; Jörg Peters 001; Yong Zhou 002 (J. Symb. Comput., 2010)

Learning Hierarchical Sparse Representations using Iterative Dictionary Learning and Dimension Reduction. - Mohamad Tarifi; Meera Sitharam; Jeffery Ho (BICA, 2011)

EASAL (Efficient Atlasing, Analysis and Search of Molecular Assembly Landscapes). - Aysegul Ozkan; Meera Sitharam (BICoB, 2011)

Cayley Configuration Spaces of 1-dof Tree-decomposable Linkages, Part I: Structure and Extreme Points - Meera Sitharam; Menghan Wang; Heping Gao (CoRR, 2011)

Cayley Configuration Spaces of 1-dof Tree-decomposable Linkages, Part II: Combinatorial Characterization of Complexity - Meera Sitharam; Menghan Wang; Heping Gao (CoRR, 2011)

Robustness measure for an adeno-associated viral shell self-assembly is accurately predicted by configuration space atlasing using EASAL. - Ruijin Wu; Aysegul Ozkan; Antonette Bennett; Mavis Agbandje-McKenna; Meera Sitharam (BCB, 2012)

Body-and-cad geometric constraint systems. - Kirk Haller; Audrey Lee-St. John; Meera Sitharam; Ileana Streinu; Neil White (Comput. Geom., 2012)

On Flattenability of Graphs. - Meera Sitharam; Joel Willoughby (ADG, 2014)

Combinatorial Rigidity and Independence of Generalized Pinned Subspace-Incidence Constraint Systems. - Menghan Wang; Meera Sitharam (ADG, 2014)

An Incidence Geometry Approach to Dictionary Learning. - Meera Sitharam; Mohamad Tarifi; Menghan Wang (CCCG, 2014)

How the Beast really moves: Cayley analysis of mechanism realization spaces using CayMos. - Meera Sitharam; Menghan Wang (Comput. Aided Des., 2014)

Cayley Analysis of Mechanism Configuration Spaces using CayMos: Software Functionalities and Architecture. - Menghan Wang; Meera Sitharam (CoRR, 2014)

Modeling Autonomous Supramolecular Assembly. - Meera Sitharam (Discrete and Topological Models in Molecular Biology, 2014)

Optimal decomposition and recombination of isostatic geometric constraint systems for designing layered materials. - Troy Baker; Meera Sitharam; Menghan Wang; Joel Willoughby (Comput. Aided Geom. Des., 2015)

Algorithm 951: Cayley Analysis of Mechanism Configuration Spaces using CayMos: Software Functionalities and Architecture. - Menghan Wang; Meera Sitharam (ACM Trans. Math. Softw., 2015)

Symmetry in Sphere-Based Assembly Configuration Spaces. - Meera Sitharam; Andrew Vince; Menghan Wang; Miklós Bóna (Symmetry, 2016)

AlgorithmXXX: Efficient Atlasing and Search of Configuration Spaces of Point-Sets Constrained by Distance Intervals. - Aysegul Ozkan; Rahul Prabhu; Troy Baker; James Pence; Jörg Peters 001; Meera Sitharam (CoRR, 2018)

Foreword to special issue. - Meera Sitharam; Audrey St. John (J. Symb. Comput., 2018)

Combinatorial rigidity of incidence systems and application to dictionary learning. - Meera Sitharam; Mohamad Tarifi; Menghan Wang (J. Symb. Comput., 2018)

Algorithm 990: Efficient Atlasing and Search of Configuration Spaces of Point-Sets Constrained by Distance Intervals. - Aysegul Ozkan; Rahul Prabhu; Troy Baker; James Pence; Jörg Peters 001; Meera Sitharam (ACM Trans. Math. Softw., 2018)

Corner-sharing tetrahedra for modeling micro-structure. - Meera Sitharam; Jeremy Youngquist; Maxwell Nolan; Jörg Peters 001 (Comput. Aided Des., 2019)

Plane-Activated Mapped Microstructure. - Jeremy Youngquist; Jörg Peters 001; Meera Sitharam (CoRR, 2020)

Atlasing of Assembly Landscapes using Distance Geometry and Graph Rigidity. - Rahul Prabhu; Meera Sitharam; Aysegul Ozkan; Ruijin Wu (J. Chem. Inf. Model., 2020)

Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis. - Ruijin Wu; Rahul Prabhu; Aysegul Ozkan; Meera Sitharam (PLoS Comput. Biol., 2020)

A Slice-Traversal Algorithm for Very Large Mapped Volumetric Models. - Jeremy Youngquist; Meera Sitharam; Jörg Peters 001 (Comput. Aided Des., 2021)

Parallel Exploration of Directed Acyclic Graphs using the Actor Model. - Rahul Prabhu; Amit Verma; Meera Sitharam (CoRR, 2022)

Flip paths between lattice triangulations. - William Sims; Meera Sitharam (Discret. Appl. Math., 2023)

Parallel Online Directed Acyclic Graph Exploration for Atlasing Soft-Matter Assembly Configuration Spaces. - Rahul Prabhu; Amit Verma; Meera Sitharam (HPEC, 2024)

Best of two worlds: Cartesian sampling and volume computation for distance-constrained configuration spaces using Cayley coordinates. - Yichi Zhang 011; Meera Sitharam (CoRR, 2024)

Characterizing graph-nonedge pairs with single interval Cayley configuration spaces in 3-dimensions. - William Sims; Meera Sitharam (CoRR, 2024)

A new discrete-geometry approach for integrative docking of proteins using chemical crosslinks. - Yichi Zhang 011; Muskaan Jindal; Shruthi Viswanath; Meera Sitharam (Zenodo, 2024)

A New Discrete-Geometry Approach for Integrative Docking of Proteins Using Chemical Cross-Links. - Yichi Zhang 011; Muskaan Jindal; Shruthi Viswanath; Meera Sitharam (J. Chem. Inf. Model., 2025)