SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data. - Mehdi Pirooznia; Youping Deng (BMC Bioinform., 2006)

RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. - Venkata Thodima; Mehdi Pirooznia; Youping Deng (BMC Bioinform., 2006)

Efficiency of Hybrid Normalization of Microarray Gene Expression: A Simulation Study. - Mehdi Pirooznia; Youping Deng (AINA Workshops (1), 2007)

An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. - Mehdi Pirooznia; Arun Rawat; Jack Y. Yang; Mary Qu Yang; Ping Gong 001; Edward J. Perkins; Youping Deng (BIBE, 2007)

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida. - Mehdi Pirooznia; Ping Gong 001; Xin Guan; Laura S. Inouye; Kuan Yang; Edward J. Perkins; Youping Deng (BMC Bioinform., 2007)

A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. - Ping Gong 001; Mehdi Pirooznia; Xin Guan; J. Cristobal Vera; Chun Liang; Youping Deng; Chaoyang Zhang; Edward J. Perkins (BIOCOMP, 2008)

Creating a Workflow for Expressed Sequence Tags Analysis. - Mehdi Pirooznia; Ping Gong 001; Chaoyang Zhang; Edward J. Perkins; Youping Deng (BIOCOMP, 2008)

GOfetcher: a database with complex searching facility for gene ontology. - Mehdi Pirooznia; Tanwir Habib; Edward J. Perkins; Youping Deng (Bioinform., 2008)

Genomic Resources for Karenia brevis. - Mehdi Pirooznia; Douglas Crawford; Jeffrey Vanwye; Russell Gibson; Chaoyang Zhang; Youping Deng; Timothy McLean (BIOCOMP, 2009)

Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus). - Alexander Pozhikov; Mehdi Pirooznia; Rachel Ryan; Chaoyang Zhang; Ping Gong 001; Edward J. Perkins; Youping Deng; Marius Brouwer (BIOCOMP, 2009)

Data Mining Approaches for Genome-Wide Association of Mood Disorders. - Mehdi Pirooznia; Fayaz Seifuddin; Jennifer Toolan Judy; Pamela B. Mahon; James B. Potash; Peter P. Zandi (BIOCOMP, 2010)

SynaptomeDB: an ontology-based knowledgebase for synaptic genes. - Mehdi Pirooznia; Tao Wang; Dimitrios Avramopoulos; David Valle; Gareth Thomas; Richard L. Huganir; Fernando S. Goes; James B. Potash; Peter P. Zandi (Bioinform., 2012)

SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies. - Mehdi Pirooznia; Fayaz Seifuddin; Fernando S. Goes; Jeffrey T. Leek; Peter P. Zandi (Source Code Biol. Medicine, 2013)