PanTools: representation, storage and exploration of pan-genomic data. - Siavash Sheikhizadeh; M. Eric Schranz; Mehmet Akdel; Dick de Ridder; Sandra Smit (Bioinform., 2016)

Geometricus represents protein structures as shape-mers derived from moment invariants. - Janani Durairaj; Mehmet Akdel; Dick de Ridder; Aalt D. J. van Dijk (Bioinform., 2020)

Algorithms for biological sequence data. - Mehmet Akdel (2022)

Reinforcement Learning-Driven Linker Design via Fast Attention-based Point Cloud Alignment. - Rebecca M. Neeser; Mehmet Akdel; Daniel Kovtun; Luca Naef (CoRR, 2023)