Data Analysis for Atomic Shapes in Nuclear Science. - Mehmet Cagri Kaymak; Hasan Metin Aktulga; Ron Fox; Sean N. Liddick (ICCS (2), 2019)

Robust Adversarial Defense by Tensor Factorization. - Manish Bhattarai; Mehmet Cagri Kaymak; Ryan Barron; Ben Nebgen; Kim Ø. Rasmussen; Boian S. Alexandrov (ICMLA, 2023)

End-to-End Differentiable Reactive Molecular Dynamics Simulations Using JAX. - Mehmet Cagri Kaymak; Samuel S. Schoenholz; Ekin D. Cubuk; Kurt A. O'Hearn; Kenneth M. Merz Jr.; Hasan Metin Aktulga (ISC, 2023)

AmberTools. - David A. Case; Hasan Metin Aktulga; Kellon Belfon; David S. Cerutti; G. Andrés Cisneros; Vinícius Wilian D. Cruzeiro; Negin Forouzesh; Timothy J. Giese; Andreas W. Götz; Holger Gohlke; Saeed Izadi; Koushik Kasavajhala; et al. (J. Chem. Inf. Model., 2023)

GPU-Accelerated Charge-Equilibration for Shadow Molecular Dynamics in Python. - Mehmet Cagri Kaymak; Nicholas Lubbers; Christian F. A. Negre; Michael E. Wall; Anders M. N. Niklasson (CoRR, 2025)