Homology model directed alignment selection for comparative molecular field analysis: Application to photosystem II inhibitors. - Mehran Jalaie; Jon A. Erickson (J. Comput. Aided Mol. Des., 2000)

Conditional Probability: A New Fusion Method for Merging Disparate Virtual Screening Results. - John W. Raymond; Mehran Jalaie; Mary P. Bradley (J. Chem. Inf. Model., 2004)

The flexible alignment of molecular structures using simulated annealing with weighted Lagrangian multipliers. - John W. Raymond; Daniel D. Holsworth; Mehran Jalaie (J. Comput. Chem., 2011)