kNN-based multi-spectral MRI brain tissue classification: manual training versus automated atlas-based training. - Henri A. Vrooman; Chris A. Cocosco; Rik Stokking; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (Image Processing, 2006)

Automatic Segmentation of Brain Tissue Andwhitematter Lesions in MRI. - Renske de Boer; Fedde van der Lijn; Henri A. Vrooman; Meike W. Vernooij; Mohammad Arfan Ikram; Monique M. B. Breteler; Wiro J. Niessen (ISBI, 2007)

Automated localization of periventricular and subcortical white matter lesions. - Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Henri A. Vrooman; Daniel Rueckert; Alexander Hammers; Monique M. B. Breteler; Wiro J. Niessen (Image Processing, 2007)

Fiber density asymmetry of the arcuate fasciculus in relation to functional hemispheric language lateralization in both right- and left-handed healthy subjects: A combined fMRI and DTI study. - Meike W. Vernooij; Marion Smits; Piotr Wielopolski; Gavin Houston; Gabriel P. Krestin; Aad van der Lugt (NeuroImage, 2007)

Multi-spectral brain tissue segmentation using automatically trained k-Nearest-Neighbor classification. - Henri A. Vrooman; Chris A. Cocosco; Fedde van der Lijn; Rik Stokking; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2007)

White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging. - Meike W. Vernooij; Marius de Groot; Aad van der Lugt; Mohammad Arfan Ikram; Gabriel P. Krestin; Albert Hofman; Wiro J. Niessen; Monique M. B. Breteler (NeuroImage, 2008)

Iterative Co-linearity Filtering and Parameterization of Fiber Tracts in the Entire Cingulum. - Marius de Groot; Meike W. Vernooij; Stefan Klein 001; Alexander Leemans; Renske de Boer; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (MICCAI (1), 2009)

White matter lesion extension to automatic brain tissue segmentation on MRI. - Renske de Boer; Henri A. Vrooman; Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2009)

Statistical Analysis of Structural Brain Connectivity. - Renske de Boer; Michiel Schaap; Fedde van der Lijn; Henri A. Vrooman; Marius de Groot; Meike W. Vernooij; Mohammad Arfan Ikram; Evert F. S. van Velsen; Aad van der Lugt; Monique M. B. Breteler (MICCAI (2), 2010)

Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods. - Renske de Boer; Henri A. Vrooman; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Aad van der Lugt; Wiro J. Niessen (NeuroImage, 2010)

Improved Tissue Segmentation by Including an MR Acquisition Model. - Dirk H. J. Poot; Marleen de Bruijne; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen (MBIA, 2011)

Statistical analysis of minimum cost path based structural brain connectivity. - Renske de Boer; Michiel Schaap; Fedde van der Lijn; Henri A. Vrooman; Marius de Groot; Aad van der Lugt; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2011)

A computer aided detection system for cerebral microbleeds in brain MRI. - Babak Ghafaryasl; Fedde van der Lijn; Marielle Poels; Henri A. Vrooman; Mohammad Arfan Ikram; Wiro J. Niessen; Aad van der Lugt; Meike W. Vernooij; Marleen de Bruijne (ISBI, 2012)

Quantitative imaging biomarkers in neurologic disease: Population study perspective. - Wiro J. Niessen; Henri A. Vrooman; Renske de Boer; Fedde van der Lijn; Hakim C. Achterberg; Marcel Koek; Stefan Klein 001; Aad van der Lugt; Marleen de Bruijne; Mohammad Arfan Ikram; Meike W. Vernooij (ISBI, 2012)

Supervised Image Segmentation across Scanner Protocols: A Transfer Learning Approach. - Annegreet van Opbroek; Mohammad Arfan Ikram; Meike W. Vernooij; Marleen de Bruijne (MLMI, 2012)

Structural and diffusion MRI measures of the hippocampus and memory performance. - Tom den Heijer; Fedde van der Lijn; Meike W. Vernooij; Marius de Groot; P. J. Koudstaal; Aad van der Lugt; Gabriel P. Krestin; Albert Hofman; Wiro J. Niessen; Monique M. B. Breteler (NeuroImage, 2012)

Automated measurement of local white matter lesion volume. - Fedde van der Lijn; Benjamin F. J. Verhaaren; Mohammad Arfan Ikram; Stefan Klein 001; Marleen de Bruijne; Henri A. Vrooman; Meike W. Vernooij; Alexander Hammers; Daniel Rueckert; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2012)

A Transfer-Learning Approach to Image Segmentation Across Scanners by Maximizing Distribution Similarity. - Annegreet van Opbroek; Mohammad Arfan Ikram; Meike W. Vernooij; Marleen de Bruijne (MLMI, 2013)

Local appearance features for robust MRI brain structure segmentation across scanning protocols. - Hakim C. Achterberg; Dirk H. J. Poot; Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Marleen de Bruijne (Image Processing, 2013)

Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. - Marius de Groot; Meike W. Vernooij; Stefan Klein 001; Mohammad Arfan Ikram; Frans M. Vos; Stephen M. Smith 001; Wiro J. Niessen; Jesper L. R. Andersson (NeuroImage, 2013)

CSF contamination-invariant statistics in diffusion-weighted MRI. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Meike de Groot; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2015)

Weighting training images by maximizing distribution similarity for supervised segmentation across scanners. - Annegreet van Opbroek; Meike W. Vernooij; Mohammad Arfan Ikram; Marleen de Bruijne (Medical Image Anal., 2015)

Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols. - Annegreet van Opbroek; Mohammad Arfan Ikram; Meike W. Vernooij; Marleen de Bruijne (IEEE Trans. Medical Imaging, 2015)

Asymmetric similarity-weighted ensembles for image segmentation. - Veronika Cheplygina; Annegreet van Opbroek; Mohammad Arfan Ikram; Meike W. Vernooij; Marleen de Bruijne (ISBI, 2016)

Modeling the brain morphology distribution in the general aging population. - Wyke Huizinga; Dirk H. J. Poot; Gennady V. Roshchupkin; Esther E. Bron; Mohammad Arfan Ikram; Meike W. Vernooij; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; M. Niestijl; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2017)

Heritability of connectivity and disconnectivity of the brain in a population-based study. - Carolyn D. Langen; Gennady V. Roshchupkin; Hieab H. Adams; Marius de Groot; Frans Vos; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen (ISBI, 2017)

The structural disconnectome: A pathology-sensitive extension of the structural connectome. - Carolyn D. Langen; Meike W. Vernooij; Lotte G. M. Cremers; Wyke Huizinga; Marius de Groot; Mohammad Arfan Ikram; Tonya White; Wiro J. Niessen (ISBI, 2017)

GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. - Florian Dubost; Gerda Bortsova; Hieab Adams; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (MICCAI (3), 2017)

Transfer Learning by Asymmetric Image Weighting for Segmentation across Scanners. - Veronika Cheplygina; Annegreet van Opbroek; Mohammad Arfan Ikram; Meike W. Vernooij; Marleen de Bruijne (CoRR, 2017)

Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. - Bo Li 088; Marius de Groot; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Esther E. Bron (MLMI@MICCAI, 2018)

Subregional volumes of the hippocampus in relation to cognitive function and risk of dementia. - Tavia E. Evans; Hieab H. H. Adams; Silvan Licher; Frank J. Wolters; Aad van der Lugt; M. Kamran Ikram; Michael J. O'Sullivan; Meike W. Vernooij; Mohammad Arfan Ikram (NeuroImage, 2018)

A spatio-temporal reference model of the aging brain. - Wyke Huizinga; Dirk H. J. Poot; Meike W. Vernooij; Gennady Roshchupkin; Esther Bron; Mohammad Arfan Ikram; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (NeuroImage, 2018)

Disconnection due to white matter hyperintensities is associated with lower cognitive scores. - Carolyn D. Langen; Lotte G. M. Cremers; Marius de Groot; Tonya White; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij (NeuroImage, 2018)

Hydranet: Data Augmentation for Regression Neural Networks. - Florian Dubost; Gerda Bortsova; Hieab Adams; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (MICCAI (4), 2019)

Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI Across Sites. - Florian Dubost; Max Dünnwald; Denver Huff; Vincent Scheumann; Frank Schreiber; Meike W. Vernooij; Wiro J. Niessen; Martin Skalej; Stefanie Schreiber; Steffen Oeltze-Jafra; Marleen de Bruijne (OR/MLCN@MICCAI, 2019)

A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Marius de Groot; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (MICCAI (3), 2019)

Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. - Kimberlin M. H. van Wijnen; Florian Dubost; Pinar Yilmaz; Mohammad Arfan Ikram; Wiro J. Niessen; Hieab Adams; Meike W. Vernooij; Marleen de Bruijne (MICCAI (4), 2019)

Automated Image Registration Quality Assessment Utilizing Deep-learning based Ventricle Extraction in Clinical Data. - Florian Dubost; Marleen de Bruijne; Marco Nardin; Adrian V. Dalca; Kathleen L. Donahue; Anne-Katrin Giese; Mark R. Etherton; Ona Wu; Marius de Groot; Wiro J. Niessen; Meike W. Vernooij; Natalia S. Rost; et al. (CoRR, 2019)

3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI. - Florian Dubost; Hieab Adams; Gerda Bortsova; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (Medical Image Anal., 2019)

Enlarged perivascular spaces in brain MRI: Automated quantification in four regions. - Florian Dubost; Pinar Yilmaz; Hieab Adams; Gerda Bortsova; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (NeuroImage, 2019)

Patterns of functional connectivity in an aging population: The Rotterdam Study. - Hazel I. Zonneveld; Raimon H. R. Pruim; Daniel Bos; Henri A. Vrooman; Ryan L. Muetzel; Albert Hofman; Serge A. R. B. Rombouts; Aad van der Lugt; Wiro J. Niessen; Mohammad Arfan Ikram; Meike W. Vernooij (NeuroImage, 2019)

Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics. - Natalia Vilor-Tejedor; Mohammad Arfan Ikram; Gennady V. Roshchupkin; Alejandro Cáceres; Silvia Alemany; Meike W. Vernooij; Wiro J. Niessen; Cornelia M. van Duijn; Jordi Sunyer; Hieab H. Adams; Juan R. González (Neuroinformatics, 2019)

Multi-Site Meta-Analysis of Morphometry. - Neda Jahanshad; Joshua Faskowitz; Gennady V. Roshchupkin; Derrek P. Hibar; Boris A. Gutman; Nicholas J. Tustison; Hieab H. H. Adams; Wiro J. Niessen; Meike W. Vernooij; Mohammad Arfan Ikram; Marcel P. Zwiers; Alejandro Arias-Vasquez; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Transfer Learning for Image Segmentation by Combining Image Weighting and Kernel Learning. - Annegreet van Opbroek; Hakim C. Achterberg; Meike W. Vernooij; Marleen de Bruijne (IEEE Trans. Medical Imaging, 2019)

When Weak Becomes Strong: Robust Quantification of White Matter Hyperintensities in Brain MRI scans. - Oliver Werner; Kimberlin M. H. van Wijnen; Wiro J. Niessen; Marius de Groot; Meike W. Vernooij; Florian Dubost; Marleen de Bruijne (CoRR, 2020)

Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (CoRR, 2020)

Weakly supervised object detection with 2D and 3D regression neural networks. - Florian Dubost; Hieab Adams; Pinar Yilmaz; Gerda Bortsova; Gijs van Tulder; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (Medical Image Anal., 2020)

Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation. - Florian Dubost; Marleen de Bruijne; Marco Nardin; Adrian V. Dalca; Kathleen L. Donahue; Anne-Katrin Giese; Mark R. Etherton; Ona Wu; Marius de Groot; Wiro J. Niessen; Meike W. Vernooij; Natalia S. Rost; et al. (Medical Image Anal., 2020)

Cortical gyrification in relation to age and cognition in older adults. - Sander Lamballais; Elisabeth J. Vinke; Meike W. Vernooij; Mohammad Arfan Ikram; Ryan L. Muetzel (NeuroImage, 2020)

Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. - Bo Li 088; Marius de Groot; Rebecca M. E. Steketee; Rozanna Meijboom; Marion Smits; Meike W. Vernooij; Mohammad Arfan Ikram; Jiren Liu; Wiro J. Niessen; Esther E. Bron (NeuroImage, 2020)

Associations of physical activity and screen time with white matter microstructure in children from the general population. - Maria Rodriguez-Ayllon; Ivonne P. M. Derks; Michiel A. van den Dries; Irene Esteban-Cornejo; Jeremy A. Labrecque; Junwen Yang-Huang; Hein Raat; Meike W. Vernooij; Tonya White; Francisco B. Ortega; Henning Tiemeier; Ryan L. Muetzel (NeuroImage, 2020)

Spatially Regularized Shape Analysis of the Hippocampus Using P-Spline Based Shape Regression. - Hakim C. Achterberg; Johan J. de Rooi; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Paul H. C. Eilers; Marleen de Bruijne (IEEE J. Biomed. Health Informatics, 2020)

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Mohammad Arfan Ikram; Wiro J. Niessen; Lucas J. van Vliet; Meike W. Vernooij; Frans M. Vos (IEEE Trans. Medical Imaging, 2020)

Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (Image Processing, 2021)

Automated Segmentation and Volume Measurement of Intracranial Carotid Artery Calcification on Non-Contrast CT. - Gerda Bortsova; Daniel Bos; Florian Dubost; Meike W. Vernooij; M. Kamran Ikram; Gijs van Tulder; Marleen de Bruijne (CoRR, 2021)

Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. - Wyke Huizinga; Dirk H. J. Poot; Elisabeth J. Vinke; F. Wenzel; Esther Bron; N. Toussaint; Christian Ledig; Henri A. Vrooman; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Stefan Klein 001 (Frontiers Big Data, 2021)

Longitudinal diffusion MRI analysis using Segis-Net: A single-step deep-learning framework for simultaneous segmentation and registration. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Marius de Groot; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (NeuroImage, 2021)

Progression along data-driven disease timelines is predictive of Alzheimer's disease in a population-based cohort. - Vikram Venkatraghavan; Elisabeth J. Vinke; Esther E. Bron; Wiro J. Niessen; Mohammad Arfan Ikram; Stefan Klein 001; Meike W. Vernooij (NeuroImage, 2021)

Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. - Carole H. Sudre; Kimberlin M. H. van Wijnen; Florian Dubost; Hieab Adams; David Atkinson; Frederik Barkhof; Mahlet A. Birhanu; Esther E. Bron; Robin Camarasa; Nish Chaturvedi; Yuan Chen; Zihao Chen; et al. (CoRR, 2022)

Effectiveness of contact tracing apps for SARS-CoV-2: an updated systematic review. - Kevin Jenniskens; Martin C. J. Bootsma; Johanna A. A. G. Damen; Mona Ghannad; Michiel S. Oerbekke; Meike W. Vernooij; René Spijker; Karel G. M. Moons; Mirjam E. Kretzschmar; Lotty Hooft (F1000Research, 2022)

Prior-knowledge-informed deep learning for lacune detection and quantification using multi-site brain MRI. - Bo Li 088; Jeroen de Bresser; Wiro J. Niessen; Matthias van Osch; Wiesje M. van der Flier; Geert Jan Biessels; Meike W. Vernooij; Esther Bron (CoRR, 2023)

Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. - Carole H. Sudre; Kimberlin M. H. van Wijnen; Florian Dubost; Hieab Adams; David Atkinson; Frederik Barkhof; Mahlet A. Birhanu; Esther E. Bron; Robin Camarasa; Nish Chaturvedi; Yuan Chen; Zihao Chen; et al. (Medical Image Anal., 2024)

AI-based association analysis for medical imaging using latent-space geometric confounder correction. - Xianjing Liu; Bo Li 088; Meike W. Vernooij; Eppo B. Wolvius; Gennady V. Roshchupkin; Esther E. Bron (Medical Image Anal., 2025)