APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control. - Yiling Elaine Chen; Xinzhou Ge; Kyla Woyshner; Meilu McDermott; Antigoni Manousopoulou; Scott B. Ficarro; Jarrod A. Marto; Kexin Li; Leo David Wang; Jingyi Jessica Li (Genom. Proteom. Bioinform., 2024)

Data-driven model discovery and model selection for noisy biological systems. - Xiaojun Wu; Meilu McDermott; Adam L. Maclean (PLoS Comput. Biol., 2025)