A Review About Transcription Factor Binding Sites Prediction Based on Deep Learning. - Yuanqi Zeng; Meiqin Gong; Meng Lin; Dongrui Gao; Yongqing Zhang (IEEE Access, 2020)

Towards a better understanding of TF-DNA binding prediction from genomic features. - Zixuan Wang; Meiqin Gong; Yuhang Liu; Shuwen Xiong; Maocheng Wang; Jiliu Zhou; Yongqing Zhang (Comput. Biol. Medicine, 2022)

Fusion prior gene network for high reliable single-cell gene regulatory network inference. - Yongqing Zhang; Yuchen He; Qingyuan Chen; Yihan Yang; Meiqin Gong (Comput. Biol. Medicine, 2022)

Interpretable single-cell transcription factor prediction based on deep learning with attention mechanism. - Meiqin Gong; Yuchen He; Maocheng Wang; Yongqing Zhang; Chunli Ding (Comput. Biol. Chem., 2023)

scAuto as a comprehensive framework for single-cell chromatin accessibility data analysis. - Meiqin Gong; Yun Yu; Zixuan Wang; Junming Zhang; Xiongyi Wang; Cheng Fu; Yongqing Zhang; Xiaodong Wang (Comput. Biol. Medicine, 2024)

MMGCSyn: Explainable synergistic drug combination prediction based on multimodal fusion. - Yongqing Zhang; Hao Yuan; Yuhang Liu; Shuwen Xiong; Zhigan Zhou; Yugui Xu; Xinyu Mao; Meiqin Gong (Future Gener. Comput. Syst., 2025)